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hypothetical protein [Arabidopsis thaliana]

GenBank: AAG26081.1

Identical Proteins FASTA Graphics 

LOCUS       AC069299_7               478 aa            linear   PLN 25-OCT-2000
DEFINITION  hypothetical protein [Arabidopsis thaliana].
ACCESSION   AAG26081
VERSION     AAG26081.1
DBSOURCE    accession AC069299.2
KEYWORDS    .
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 478)
  AUTHORS   Lin,X., Kaul,S., Town,C.D., Benito,M.-I., Creasy,T.H., Haas,B.J.,
            Wu,D., Maiti,R., Ronning,C.M., Koo,H., Fujii,C.Y., Utterback,T.R.,
            Barnstead,M.E., Bowman,C.L., White,O., Nierman,W.C. and Fraser,C.M.
  TITLE     Arabidopsis thaliana chromosome 1 BAC T1E4 genomic sequence
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 478)
  AUTHORS   Town,C.D. and Kaul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2000) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA, cdtown@tigr.org
REFERENCE   3  (residues 1 to 478)
  AUTHORS   Town,C.D. and Kaul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2000) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA, cdtown@tigr.org
COMMENT     Address all correspondence to:at@tigr.org
            
            BAC clone T1E4 is from Arabidopsis thaliana chromosome 1
            The orientation of the sequence is from SP6 to T7 end of the BAC
            clone.
            Genes were identified by a combination of several methods: Gene
            prediction programs including Genscan+ (Chris Burge,
            http://CCR-081.mit.edu/GENSCAN.html), GeneMarkHMM (Mark Borodovsky,
            http://genemark.biology.gatech.edu/GeneMark/), GlimmerA (a variant
            of GlimmerM, see Mihaela Pertea,
            http://www.tigr.org/softlab/glimmerm_htm/glimmerm.html, and
            GeneSplicer (Mihaela Pertea and Steven Salzberg, contact
            mpertea@tigr.org), searches of the complete sequence against a
            peptide database and the plant EST database at TIGR
            (http://www.tigr.org/tdb/tgi.shtml). Annotated genes are named to
            indicate the level of evidence for their annotation. Genes with
            similarity to other proteins are named after the database hits.
            Genes without significant peptide similarity but with EST
            similarity are named as  unknown  proteins. Genes without protein
            or EST similarity, that are predicted by more than two gene
            prediction programs over most of their length are annotated as
            hypothetical  proteins. Genes encoding tRNAs are predicted by
            tRNAscan-SE (Sean Eddy, http://genome.wustl.edu/eddy/tRNAscan-SE/).
            Simple repeats are identified by repeatmasker (Arian Smit,
            http://ftp.genome.washington.edu/RM/RepeatMasker.html).
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="I"
                     /map="mi423"
                     /clone="T1E4"
                     /ecotype="Columbia"
     Protein         1..478
                     /product="hypothetical protein"
     Region          7..>453
                     /region_name="PLN00113"
                     /note="leucine-rich repeat receptor-like protein kinase;
                     Provisional"
                     /db_xref="CDD:215061"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..175
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          176..199
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          200..223
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          224..248
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          249..272
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          273..296
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          297..319
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          348..393
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          394..438
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..478
                     /gene="T1E4.2"
                     /coded_by="complement(AC069299.2:16951..18387)"
ORIGIN      
        1 mnsccfplfi fafviflrcl spieaatchp ddeagllafk sgitqdptgi lsswkkgtdc
       61 cswkgvgclt nrvtglting qsdvtgsfls gtispslakl qhlvgiyftn lrnitgsfpq
      121 flfqlpnvkq vyftnsrlsg plpanigals elgelsldgn lftgpipssi snltrlylln
      181 lgdnlltgti plglanlkil lslnfgnnrl setipdifks mqklqsltls rnkfsgnlpp
      241 siaslkpiln yldlsqnnls gtiptflsnf kvldsldlsr nrfsgvvpks lanmpklfhl
      301 nlshnfltgp lpamknvdgl atldlsynqf hlktipkwvt sspsmyslkl vkcginmsld
      361 nwkpvrpniy fyidlsenei sgsltwffnl ahnlyefqas gnklrfdmgk lnlserlesl
      421 dlsrnlifgk vpmtvaklqk lnlshnhlcg klpvtkfpas afvgndclcg splspcki
//
Feature
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