LOCUS NP_061449 169 aa linear CON 17-DEC-2014
DEFINITION ygfA (plasmid) [Escherichia coli K-12].
ACCESSION NP_061449
VERSION NP_061449.1
DBLINK BioProject: PRJNA178640
DBSOURCE REFSEQ: accession NC_002483.1
KEYWORDS RefSeq.
SOURCE Escherichia coli K-12
ORGANISM Escherichia coli K-12
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1
AUTHORS Manwaring,N.P., Skurray,R.A. and Firth,N.
TITLE Nucleotide sequence of the F plasmid leading region
JOURNAL Plasmid 41 (3), 219-225 (1999)
PUBMED 10366527
REFERENCE 2
AUTHORS Broom,J.E., Hill,D.F., Hughes,G., Jones,W.A., McNaughton,J.C.,
Stockwell,P.A. and Petersen,G.B.
TITLE Sequence of a transposon identified as Tn1000 (gamma delta)
JOURNAL DNA Seq. 5 (3), 185-189 (1995)
PUBMED 7612932
REFERENCE 3
AUTHORS Frost,L.S., Ippen-Ihler,K. and Skurray,R.A.
TITLE Analysis of the sequence and gene products of the transfer region
of the F sex factor
JOURNAL Microbiol. Rev. 58 (2), 162-210 (1994)
PUBMED 7915817
REFERENCE 4
AUTHORS Yoshioka,Y., Fujita,Y. and Ohtsubo,E.
TITLE Nucleotide sequence of the promoter-distal region of the tra operon
of plasmid R100, including traI (DNA helicase I) and traD genes
JOURNAL J. Mol. Biol. 214 (1), 39-53 (1990)
PUBMED 2164585
REFERENCE 5
AUTHORS Saadi,S., Maas,W.K., Hill,D.F. and Bergquist,P.L.
TITLE Nucleotide sequence analysis of RepFIC, a basic replicon present in
IncFI plasmids P307 and F, and its relation to the RepA replicon of
IncFII plasmids
JOURNAL J. Bacteriol. 169 (5), 1836-1846 (1987)
PUBMED 3032897
REFERENCE 6
AUTHORS Helsberg,M. and Eichenlaub,R.
TITLE Twelve 43-base-pair repeats map in a cis-acting region essential
for partition of plasmid mini-F
JOURNAL J. Bacteriol. 165 (3), 1043-1045 (1986)
PUBMED 3949712
REFERENCE 7
AUTHORS Eichenlaub,R.
TITLE F Plasmid DNA complete mini-F region (F coordinates 40.301F to
49.869F)
JOURNAL Unpublished
REFERENCE 8
AUTHORS Shimizu,H., Saitoh,Y., Suda,Y., Uehara,K., Sampei,G. and
Mizobuchi,K.
TITLE Complete nucleotide sequence of the F plasmid: Its implications for
organization and diversification of plasmid genomes
JOURNAL Unpublished
REFERENCE 9 (residues 1 to 169)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 10 (residues 1 to 169)
AUTHORS Sampei,G. and Mizobuchi,K.
TITLE Direct Submission
JOURNAL Submitted (27-APR-2000) Contact:Gen-ichi Sampei The University of
Electro-Communications, Department of Applied Physics and
Chemistry; 1-5-1, Chofugaoka, Chofu, Tokyo 182-8585, Japan
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to BAA97940.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..169
/organism="Escherichia coli K-12"
/strain="K-12"
/sub_strain="CR63"
/db_xref="taxon:83333"
/plasmid="F"
Protein 1..169
/product="hypothetical protein"
/name="ygfA"
/calculated_mol_wt=19154
Region 1..169
/region_name="PRK13722"
/note="lytic transglycosylase; Provisional"
/db_xref="CDD:184274"
Site order(44,66..68,71,99,117..118)
/site_type="other"
/note="putative sugar binding site [chemical binding]"
/db_xref="CDD:381603"
CDS 1..169
/gene="ygfA"
/locus_tag="D616_p97001"
/old_locus_tag="Fpla072"
/coded_by="complement(NC_002483.1:65556..66065)"
/note="100 pct identical to sp:X194_ECOLI[hypothetical
protein 169 precursor (oriT 5' region) of plasmid F]"
/transl_table=11
/db_xref="GeneID:1263507"
CONTIG join(WP_000759160.1:1..169)
ORIGIN
1 mkkwmlaicl mfineichat dcfdlagrdy kidpdllrai swkesryrvn aiginpvtgy
61 gsglmqvdsq hfnelarygi kpehlttdpc mniytgayyl aiafkkwgvs weavgaynag
121 frkterqnqr rlayasdvyr iytgiksskg iripatkksl peinsvqnn
//