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ygfA (plasmid) [Escherichia coli K-12]

Identical Proteins FASTA Graphics 

LOCUS       NP_061449                169 aa            linear   CON 17-DEC-2014
DEFINITION  ygfA (plasmid) [Escherichia coli K-12].
ACCESSION   NP_061449
VERSION     NP_061449.1
DBLINK      BioProject: PRJNA178640
DBSOURCE    REFSEQ: accession NC_002483.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli K-12
  ORGANISM  Escherichia coli K-12
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Manwaring,N.P., Skurray,R.A. and Firth,N.
  TITLE     Nucleotide sequence of the F plasmid leading region
  JOURNAL   Plasmid 41 (3), 219-225 (1999)
   PUBMED   10366527
REFERENCE   2
  AUTHORS   Broom,J.E., Hill,D.F., Hughes,G., Jones,W.A., McNaughton,J.C.,
            Stockwell,P.A. and Petersen,G.B.
  TITLE     Sequence of a transposon identified as Tn1000 (gamma delta)
  JOURNAL   DNA Seq. 5 (3), 185-189 (1995)
   PUBMED   7612932
REFERENCE   3
  AUTHORS   Frost,L.S., Ippen-Ihler,K. and Skurray,R.A.
  TITLE     Analysis of the sequence and gene products of the transfer region
            of the F sex factor
  JOURNAL   Microbiol. Rev. 58 (2), 162-210 (1994)
   PUBMED   7915817
REFERENCE   4
  AUTHORS   Yoshioka,Y., Fujita,Y. and Ohtsubo,E.
  TITLE     Nucleotide sequence of the promoter-distal region of the tra operon
            of plasmid R100, including traI (DNA helicase I) and traD genes
  JOURNAL   J. Mol. Biol. 214 (1), 39-53 (1990)
   PUBMED   2164585
REFERENCE   5
  AUTHORS   Saadi,S., Maas,W.K., Hill,D.F. and Bergquist,P.L.
  TITLE     Nucleotide sequence analysis of RepFIC, a basic replicon present in
            IncFI plasmids P307 and F, and its relation to the RepA replicon of
            IncFII plasmids
  JOURNAL   J. Bacteriol. 169 (5), 1836-1846 (1987)
   PUBMED   3032897
REFERENCE   6
  AUTHORS   Helsberg,M. and Eichenlaub,R.
  TITLE     Twelve 43-base-pair repeats map in a cis-acting region essential
            for partition of plasmid mini-F
  JOURNAL   J. Bacteriol. 165 (3), 1043-1045 (1986)
   PUBMED   3949712
REFERENCE   7
  AUTHORS   Eichenlaub,R.
  TITLE     F Plasmid DNA complete mini-F region (F coordinates 40.301F to
            49.869F)
  JOURNAL   Unpublished
REFERENCE   8
  AUTHORS   Shimizu,H., Saitoh,Y., Suda,Y., Uehara,K., Sampei,G. and
            Mizobuchi,K.
  TITLE     Complete nucleotide sequence of the F plasmid: Its implications for
            organization and diversification of plasmid genomes
  JOURNAL   Unpublished
REFERENCE   9  (residues 1 to 169)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   10 (residues 1 to 169)
  AUTHORS   Sampei,G. and Mizobuchi,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2000) Contact:Gen-ichi Sampei The University of
            Electro-Communications, Department of Applied Physics and
            Chemistry; 1-5-1, Chofugaoka, Chofu, Tokyo 182-8585, Japan
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to BAA97940.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Escherichia coli K-12"
                     /strain="K-12"
                     /sub_strain="CR63"
                     /db_xref="taxon:83333"
                     /plasmid="F"
     Protein         1..169
                     /product="hypothetical protein"
                     /name="ygfA"
                     /calculated_mol_wt=19154
     Region          1..169
                     /region_name="PRK13722"
                     /note="lytic transglycosylase; Provisional"
                     /db_xref="CDD:184274"
     Site            order(44,66..68,71,99,117..118)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:381603"
     CDS             1..169
                     /gene="ygfA"
                     /locus_tag="D616_p97001"
                     /old_locus_tag="Fpla072"
                     /coded_by="complement(NC_002483.1:65556..66065)"
                     /note="100 pct identical to sp:X194_ECOLI[hypothetical
                     protein 169 precursor (oriT 5' region) of plasmid F]"
                     /transl_table=11
                     /db_xref="GeneID:1263507"
CONTIG      join(WP_000759160.1:1..169)
ORIGIN      
        1 mkkwmlaicl mfineichat dcfdlagrdy kidpdllrai swkesryrvn aiginpvtgy
       61 gsglmqvdsq hfnelarygi kpehlttdpc mniytgayyl aiafkkwgvs weavgaynag
      121 frkterqnqr rlayasdvyr iytgiksskg iripatkksl peinsvqnn
//
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