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tubulin beta 8 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_568437.1

Identical Proteins FASTA Graphics 

LOCUS       NP_568437                449 aa            linear   PLN 20-OCT-2022
DEFINITION  tubulin beta 8 [Arabidopsis thaliana].
ACCESSION   NP_568437
VERSION     NP_568437.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_122291.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 449)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 449)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 449)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 449)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED93223.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..449
                     /product="tubulin beta 8"
                     /calculated_mol_wt=50476
     Region          1..430
                     /region_name="PLN00220"
                     /note="tubulin beta chain; Provisional"
                     /db_xref="CDD:215107"
     CDS             1..449
                     /gene="TUB8"
                     /locus_tag="AT5G23860"
                     /gene_synonym="tubulin beta 8"
                     /coded_by="NM_122291.4:110..1459"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV800243.1,INSD:EH808666.1,INSD:AV563719.1,
                     INSD:DR335236.1,INSD:AV541160.1,INSD:BP659601.1,
                     INSD:EL973599.1,INSD:DR335249.1,INSD:DR335238.1,
                     INSD:EH964817.1,INSD:BP602194.1,INSD:BP828281.1,
                     INSD:EL321128.1,INSD:AV806383.1,INSD:DR335253.1,
                     INSD:AV560811.1,INSD:BP617647.1,INSD:AV544929.1,
                     INSD:EL201272.1,INSD:BP655498.1,INSD:EL075302.1,
                     INSD:DR335245.1,INSD:EH952536.1,INSD:ES158197.1,
                     INSD:DR335240.1,INSD:DR335250.1,INSD:EH929013.1,
                     INSD:EH811352.1,INSD:AV553487.1,INSD:DR335242.1,
                     INSD:EL088721.1,INSD:T88490.1,INSD:BP620887.1,
                     INSD:EH850082.1,INSD:DR335246.1,INSD:EL202541.1,
                     INSD:BP627292.1,INSD:ES107741.1,INSD:AV782544.1,
                     INSD:EL240372.1,INSD:BP604745.1,INSD:EH828051.1,
                     INSD:AV559995.1,INSD:DR335241.1,INSD:BP840992.1,
                     INSD:DR335243.1,INSD:EL083236.1,INSD:BP653081.1,
                     INSD:EL042395.1,INSD:BP650075.1,INSD:AV561786.1,
                     INSD:BP627006.1,INSD:AA041090.1,INSD:EH964746.1,
                     INSD:T41808.1,INSD:DR335235.1,INSD:C99832.1,
                     INSD:EL098186.1,INSD:EL117711.1,INSD:DR335251.1,
                     INSD:BP655798.1,INSD:AV557308.1,INSD:BP839232.1,
                     INSD:AV821954.1,INSD:AV802324.1,INSD:BP606515.1,
                     INSD:BP620659.1,INSD:DR335248.1,INSD:BP608271.1,
                     INSD:BP608420.1,INSD:ES063680.1,INSD:BP647589.1,
                     INSD:EL025296.1,INSD:EL069270.1,INSD:BP641109.1,
                     INSD:EL260244.1,INSD:AV542031.1,INSD:EL208626.1,
                     INSD:DR335233.1,INSD:EL013706.1,INSD:EH981525.1,
                     INSD:DR376952.1,INSD:DR335239.1,INSD:EH842119.1,
                     INSD:EL206639.1,INSD:BP828828.1,INSD:AV819338.1,
                     INSD:EL017239.1,INSD:ES200679.1,INSD:EL974239.1,
                     INSD:DR335234.1,INSD:DR335237.1,INSD:EH907590.1,
                     INSD:DR374840.1,INSD:AV556317.1,INSD:BP584141.1,
                     INSD:BP621588.1,INSD:BP650568.1,INSD:EL085845.1,
                     INSD:DR335244.1,INSD:BP646226.1,INSD:AV440414.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY081473.1,INSD:AY054693.1"
                     /note="tubulin beta 8 (TUB8); FUNCTIONS IN: protein
                     binding, structural constituent of cytoskeleton; INVOLVED
                     IN: microtubule-based process, response to cyclopentenone,
                     response to salt stress, response to cold; LOCATED IN:
                     tubulin complex, membrane; EXPRESSED IN: 25 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453),
                     Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain
                     (InterPro:IPR003008), Tubulin/FtsZ, N-terminal
                     (InterPro:IPR019746), Tubulin/FtsZ, C-terminal
                     (InterPro:IPR008280), Beta tubulin, autoregulation binding
                     site (InterPro:IPR013838), Tubulin, conserved site
                     (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich
                     domain (InterPro:IPR018316); BEST Arabidopsis thaliana
                     protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1);
                     Has 30201 Blast hits to 17322 proteins in 780 species:
                     Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
                     3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
                     (source: NCBI BLink)."
                     /db_xref="GeneID:832451"
                     /db_xref="TAIR:AT5G23860"
                     /db_xref="Araport:AT5G23860"
ORIGIN      
        1 mreilhiqgg qcgnqigakf wevvcaehgi dstgryqgen dlqlervnvy yneascgrfv
       61 pravlmdlep gtmdsvrsgp ygqifrpdnf vfgqsgagnn wakghytega elidsvldvv
      121 rkeaencdcl qgfqvchslg ggtgsgmgtl liskireeyp drmmltfsvf pspkvsdtvv
      181 epynatlsvh qlvenadecm vldnealydi cfrtlklttp sfgdlnhlis atmsgvtccl
      241 rfpgqlnsdl rklavnlipf prlhffmvgf apltsrgsqq yraltvpelt qqmwdaknmm
      301 caadprhgry ltasamfrgk mstkevdeqm invqnknssy fvewipnnvk stvcdipptg
      361 lkmastfign stsiqemfrr vseqftamfr rkaflhwytg egmdemefte aesnmndlvs
      421 eyqqyqdata deeegyeyee devevqeeq
//
Feature
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Protein clusters for NP_568437.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the TUB8 gene (NM_122291.4).
  • RefSeq protein isoforms
    See the other reference sequence protein isoform for the TUB8 gene (NP_001190373.1).

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