LOCUS NP_568437 449 aa linear PLN 20-OCT-2022
DEFINITION tubulin beta 8 [Arabidopsis thaliana].
ACCESSION NP_568437
VERSION NP_568437.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_122291.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 449)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 449)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 449)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 449)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED93223.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..449
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..449
/product="tubulin beta 8"
/calculated_mol_wt=50476
Region 1..430
/region_name="PLN00220"
/note="tubulin beta chain; Provisional"
/db_xref="CDD:215107"
CDS 1..449
/gene="TUB8"
/locus_tag="AT5G23860"
/gene_synonym="tubulin beta 8"
/coded_by="NM_122291.4:110..1459"
/inference="Similar to RNA sequence,
EST:INSD:AV800243.1,INSD:EH808666.1,INSD:AV563719.1,
INSD:DR335236.1,INSD:AV541160.1,INSD:BP659601.1,
INSD:EL973599.1,INSD:DR335249.1,INSD:DR335238.1,
INSD:EH964817.1,INSD:BP602194.1,INSD:BP828281.1,
INSD:EL321128.1,INSD:AV806383.1,INSD:DR335253.1,
INSD:AV560811.1,INSD:BP617647.1,INSD:AV544929.1,
INSD:EL201272.1,INSD:BP655498.1,INSD:EL075302.1,
INSD:DR335245.1,INSD:EH952536.1,INSD:ES158197.1,
INSD:DR335240.1,INSD:DR335250.1,INSD:EH929013.1,
INSD:EH811352.1,INSD:AV553487.1,INSD:DR335242.1,
INSD:EL088721.1,INSD:T88490.1,INSD:BP620887.1,
INSD:EH850082.1,INSD:DR335246.1,INSD:EL202541.1,
INSD:BP627292.1,INSD:ES107741.1,INSD:AV782544.1,
INSD:EL240372.1,INSD:BP604745.1,INSD:EH828051.1,
INSD:AV559995.1,INSD:DR335241.1,INSD:BP840992.1,
INSD:DR335243.1,INSD:EL083236.1,INSD:BP653081.1,
INSD:EL042395.1,INSD:BP650075.1,INSD:AV561786.1,
INSD:BP627006.1,INSD:AA041090.1,INSD:EH964746.1,
INSD:T41808.1,INSD:DR335235.1,INSD:C99832.1,
INSD:EL098186.1,INSD:EL117711.1,INSD:DR335251.1,
INSD:BP655798.1,INSD:AV557308.1,INSD:BP839232.1,
INSD:AV821954.1,INSD:AV802324.1,INSD:BP606515.1,
INSD:BP620659.1,INSD:DR335248.1,INSD:BP608271.1,
INSD:BP608420.1,INSD:ES063680.1,INSD:BP647589.1,
INSD:EL025296.1,INSD:EL069270.1,INSD:BP641109.1,
INSD:EL260244.1,INSD:AV542031.1,INSD:EL208626.1,
INSD:DR335233.1,INSD:EL013706.1,INSD:EH981525.1,
INSD:DR376952.1,INSD:DR335239.1,INSD:EH842119.1,
INSD:EL206639.1,INSD:BP828828.1,INSD:AV819338.1,
INSD:EL017239.1,INSD:ES200679.1,INSD:EL974239.1,
INSD:DR335234.1,INSD:DR335237.1,INSD:EH907590.1,
INSD:DR374840.1,INSD:AV556317.1,INSD:BP584141.1,
INSD:BP621588.1,INSD:BP650568.1,INSD:EL085845.1,
INSD:DR335244.1,INSD:BP646226.1,INSD:AV440414.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY081473.1,INSD:AY054693.1"
/note="tubulin beta 8 (TUB8); FUNCTIONS IN: protein
binding, structural constituent of cytoskeleton; INVOLVED
IN: microtubule-based process, response to cyclopentenone,
response to salt stress, response to cold; LOCATED IN:
tubulin complex, membrane; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453),
Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain
(InterPro:IPR003008), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746), Tubulin/FtsZ, C-terminal
(InterPro:IPR008280), Beta tubulin, autoregulation binding
site (InterPro:IPR013838), Tubulin, conserved site
(InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich
domain (InterPro:IPR018316); BEST Arabidopsis thaliana
protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:832451"
/db_xref="TAIR:AT5G23860"
/db_xref="Araport:AT5G23860"
ORIGIN
1 mreilhiqgg qcgnqigakf wevvcaehgi dstgryqgen dlqlervnvy yneascgrfv
61 pravlmdlep gtmdsvrsgp ygqifrpdnf vfgqsgagnn wakghytega elidsvldvv
121 rkeaencdcl qgfqvchslg ggtgsgmgtl liskireeyp drmmltfsvf pspkvsdtvv
181 epynatlsvh qlvenadecm vldnealydi cfrtlklttp sfgdlnhlis atmsgvtccl
241 rfpgqlnsdl rklavnlipf prlhffmvgf apltsrgsqq yraltvpelt qqmwdaknmm
301 caadprhgry ltasamfrgk mstkevdeqm invqnknssy fvewipnnvk stvcdipptg
361 lkmastfign stsiqemfrr vseqftamfr rkaflhwytg egmdemefte aesnmndlvs
421 eyqqyqdata deeegyeyee devevqeeq
//