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anaphase promoting complex 6 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_565188.1

Identical Proteins FASTA Graphics 

LOCUS       NP_565188                543 aa            linear   PLN 20-OCT-2022
DEFINITION  anaphase promoting complex 6 [Arabidopsis thaliana].
ACCESSION   NP_565188
VERSION     NP_565188.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_106524.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 543)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (residues 1 to 543)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 543)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 543)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (residues 1 to 543)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE36148.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     Protein         1..543
                     /product="anaphase promoting complex 6"
                     /calculated_mol_wt=61631
     Region          19..98
                     /region_name="ANAPC3"
                     /note="Anaphase-promoting complex, cyclosome, subunit 3;
                     pfam12895"
                     /db_xref="CDD:463743"
     Region          300..517
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          309..337
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          345..371
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          381..405
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          411..439
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(412,415..416,419..420,422,447,454..455,458..459,
                     461..462,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          445..479
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          484..511
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..543
                     /gene="APC6"
                     /locus_tag="AT1G78770"
                     /gene_synonym="anaphase promoting complex 6; F9K20.19;
                     F9K20_19"
                     /coded_by="NM_106524.2:503..2134"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES019702.1,INSD:AV439512.1,INSD:DR380900.1,
                     INSD:ES003315.1,INSD:EL995408.1,INSD:DR381958.1,
                     INSD:ES020015.1,INSD:EL280177.1,INSD:AU231109.1,
                     INSD:DR370076.1,INSD:ES188427.1,INSD:ES087536.1,
                     INSD:ES056351.1,INSD:ES207885.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT033023.1,INSD:AF529177.1"
                     /note="anaphase promoting complex 6 (APC6); FUNCTIONS IN:
                     binding; INVOLVED IN: regulation of DNA endoreduplication,
                     phloem or xylem histogenesis, cell cycle; LOCATED IN:
                     cellular_component unknown; EXPRESSED IN: 19 plant
                     structures; EXPRESSED DURING: 12 growth stages; CONTAINS
                     InterPro DOMAIN/s: Tetratricopeptide TPR-3
                     (InterPro:IPR011716), Tetratricopeptide TPR-1
                     (InterPro:IPR001440), Tetratricopeptide-like helical
                     (InterPro:IPR011990), Tetratricopeptide repeat-containing
                     (InterPro:IPR013026), Tetratricopeptide repeat
                     (InterPro:IPR019734); BEST Arabidopsis thaliana protein
                     match is: Tetratricopeptide repeat (TPR)-like superfamily
                     protein (TAIR:AT3G04240.1); Has 10888 Blast hits to 7341
                     proteins in 968 species: Archae - 487; Bacteria - 4678;
                     Metazoa - 2008; Fungi - 460; Plants - 439; Viruses - 0;
                     Other Eukaryotes - 2816 (source: NCBI BLink)."
                     /db_xref="Araport:AT1G78770"
                     /db_xref="GeneID:844213"
                     /db_xref="TAIR:AT1G78770"
ORIGIN      
        1 mreeeiekir gvvrdcvskh lyssaiffad kvaaltndps diymqaqalf lgrhyrrafh
       61 llnaskivlr dlrfrylaak cleelkewdq cllmlgdakv dddgivydak dgnvidfdkd
      121 gedreiniss aicflrgkay galqnrsqar qwykaaikad plcyealecl ieshmltsee
      181 essllsslqf spedgwlssf ysclikkydk estvelkfkk lenetsgsvs gssmitlann
      241 tdllackaey yhqcceyqkc feltaallek dpfhlkctlv hlaaamelgn snelylmacn
      301 lvkdypskal swfavgcyyy cikkyaearr yfskatgidg sfsparigyg nsfaaqeegd
      361 qamsayrtaa rlfpgchlpt lyigmeymrt hsykladqff mqakaicpsd plvynelgvv
      421 ayhmkeygka vrwfektlah ipsalteswe ptvvnlahay rklrkdreai syyeraltls
      481 tkslstysgl aytyhlqgnf saaisyyhka lwlkpddqfc temlnvalmd ecqngvdskv
      541 elc
//
Feature
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Protein clusters for NP_565188.1

More about the APC6 gene

  • APC6 gene
    Also Known As: AT1G78770, F9K20.19, F9...

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