LOCUS NP_565188 543 aa linear PLN 20-OCT-2022
DEFINITION anaphase promoting complex 6 [Arabidopsis thaliana].
ACCESSION NP_565188
VERSION NP_565188.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_106524.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 543)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 543)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 543)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 543)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 543)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE36148.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..543
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..543
/product="anaphase promoting complex 6"
/calculated_mol_wt=61631
Region 19..98
/region_name="ANAPC3"
/note="Anaphase-promoting complex, cyclosome, subunit 3;
pfam12895"
/db_xref="CDD:463743"
Region 300..517
/region_name="LapB"
/note="Lipopolysaccharide biosynthesis regulator
YciM/LapB, contains six TPR domains and a C-terminal
metal-binding domain [Cell wall/membrane/envelope
biogenesis]; COG2956"
/db_xref="CDD:442196"
Region 309..337
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
Region 345..371
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
Region 381..405
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
Region 411..439
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
Site order(412,415..416,419..420,422,447,454..455,458..459,
461..462,485,488..489,492..493,496)
/site_type="other"
/note="putative protein binding surface [polypeptide
binding]"
/db_xref="CDD:276809"
Region 445..479
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
Region 484..511
/region_name="TPR repeat"
/note="TPR repeat [structural motif]"
/db_xref="CDD:276809"
CDS 1..543
/gene="APC6"
/locus_tag="AT1G78770"
/gene_synonym="anaphase promoting complex 6; F9K20.19;
F9K20_19"
/coded_by="NM_106524.2:503..2134"
/inference="Similar to RNA sequence,
EST:INSD:ES019702.1,INSD:AV439512.1,INSD:DR380900.1,
INSD:ES003315.1,INSD:EL995408.1,INSD:DR381958.1,
INSD:ES020015.1,INSD:EL280177.1,INSD:AU231109.1,
INSD:DR370076.1,INSD:ES188427.1,INSD:ES087536.1,
INSD:ES056351.1,INSD:ES207885.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT033023.1,INSD:AF529177.1"
/note="anaphase promoting complex 6 (APC6); FUNCTIONS IN:
binding; INVOLVED IN: regulation of DNA endoreduplication,
phloem or xylem histogenesis, cell cycle; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; CONTAINS
InterPro DOMAIN/s: Tetratricopeptide TPR-3
(InterPro:IPR011716), Tetratricopeptide TPR-1
(InterPro:IPR001440), Tetratricopeptide-like helical
(InterPro:IPR011990), Tetratricopeptide repeat-containing
(InterPro:IPR013026), Tetratricopeptide repeat
(InterPro:IPR019734); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT3G04240.1); Has 10888 Blast hits to 7341
proteins in 968 species: Archae - 487; Bacteria - 4678;
Metazoa - 2008; Fungi - 460; Plants - 439; Viruses - 0;
Other Eukaryotes - 2816 (source: NCBI BLink)."
/db_xref="Araport:AT1G78770"
/db_xref="GeneID:844213"
/db_xref="TAIR:AT1G78770"
ORIGIN
1 mreeeiekir gvvrdcvskh lyssaiffad kvaaltndps diymqaqalf lgrhyrrafh
61 llnaskivlr dlrfrylaak cleelkewdq cllmlgdakv dddgivydak dgnvidfdkd
121 gedreiniss aicflrgkay galqnrsqar qwykaaikad plcyealecl ieshmltsee
181 essllsslqf spedgwlssf ysclikkydk estvelkfkk lenetsgsvs gssmitlann
241 tdllackaey yhqcceyqkc feltaallek dpfhlkctlv hlaaamelgn snelylmacn
301 lvkdypskal swfavgcyyy cikkyaearr yfskatgidg sfsparigyg nsfaaqeegd
361 qamsayrtaa rlfpgchlpt lyigmeymrt hsykladqff mqakaicpsd plvynelgvv
421 ayhmkeygka vrwfektlah ipsalteswe ptvvnlahay rklrkdreai syyeraltls
481 tkslstysgl aytyhlqgnf saaisyyhka lwlkpddqfc temlnvalmd ecqngvdskv
541 elc
//