LOCUS NP_178610 297 aa linear PLN 20-OCT-2022
DEFINITION TRAF-like family protein [Arabidopsis thaliana].
ACCESSION NP_178610
VERSION NP_178610.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_126565.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 297)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 297)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 297)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 297)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC05928.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..297
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..297
/product="TRAF-like family protein"
/calculated_mol_wt=33512
Region 9..140
/region_name="MATH"
/note="MATH (meprin and TRAF-C homology) domain; an
independent folding unit with an eight-stranded
beta-sandwich structure found in meprins, TRAFs and other
proteins. Meprins comprise a class of extracellular
metalloproteases which are anchored to the membrane...;
cd00121"
/db_xref="CDD:238068"
Site order(62,109..111)
/site_type="other"
/note="putative substrate binding site [chemical binding]"
/db_xref="CDD:238068"
CDS 1..297
/locus_tag="AT2G05420"
/gene_synonym="F16J10.3; F16J10_3"
/coded_by="NM_126565.2:1..894"
/note="TRAF-like family protein; CONTAINS InterPro
DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH
(InterPro:IPR002083); BEST Arabidopsis thaliana protein
match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1);
Has 819 Blast hits to 690 proteins in 70 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 43; Plants - 731;
Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink)."
/db_xref="Araport:AT2G05420"
/db_xref="GeneID:815090"
/db_xref="TAIR:AT2G05420"
ORIGIN
1 mgkqvdskti twvienfssl qsasihsdqf vvgdckwrlk aypkgnekat ylayrannla
61 lylnvansks fpigwtrhtk fsltlvnqks eklskltesq hwfdhkstsr gfpamipltn
121 lhtnegflvn geltlvakve vlevvgkldv skksspvmet idvngfqvlp qiesvnrlfa
181 khldiaskfr pkkpymktay mnvllsltkt lcqspqdlsn ddisgagaal tylreagfkl
241 dwlekkhgei kekkkkeeas lkrlqemekq ifneaqiyke kvlaarapls lnednvf
//