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TRAF-like family protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_178610.1

Identical Proteins FASTA Graphics 

LOCUS       NP_178610                297 aa            linear   PLN 20-OCT-2022
DEFINITION  TRAF-like family protein [Arabidopsis thaliana].
ACCESSION   NP_178610
VERSION     NP_178610.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_126565.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 297)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 297)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 297)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 297)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC05928.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..297
                     /product="TRAF-like family protein"
                     /calculated_mol_wt=33512
     Region          9..140
                     /region_name="MATH"
                     /note="MATH (meprin and TRAF-C homology) domain; an
                     independent folding unit with an eight-stranded
                     beta-sandwich structure found in meprins, TRAFs and other
                     proteins. Meprins comprise a class of extracellular
                     metalloproteases which are anchored to the membrane...;
                     cd00121"
                     /db_xref="CDD:238068"
     Site            order(62,109..111)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:238068"
     CDS             1..297
                     /locus_tag="AT2G05420"
                     /gene_synonym="F16J10.3; F16J10_3"
                     /coded_by="NM_126565.2:1..894"
                     /note="TRAF-like family protein; CONTAINS InterPro
                     DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH
                     (InterPro:IPR002083); BEST Arabidopsis thaliana protein
                     match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1);
                     Has 819 Blast hits to 690 proteins in 70 species: Archae -
                     0; Bacteria - 0; Metazoa - 4; Fungi - 43; Plants - 731;
                     Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G05420"
                     /db_xref="GeneID:815090"
                     /db_xref="TAIR:AT2G05420"
ORIGIN      
        1 mgkqvdskti twvienfssl qsasihsdqf vvgdckwrlk aypkgnekat ylayrannla
       61 lylnvansks fpigwtrhtk fsltlvnqks eklskltesq hwfdhkstsr gfpamipltn
      121 lhtnegflvn geltlvakve vlevvgkldv skksspvmet idvngfqvlp qiesvnrlfa
      181 khldiaskfr pkkpymktay mnvllsltkt lcqspqdlsn ddisgagaal tylreagfkl
      241 dwlekkhgei kekkkkeeas lkrlqemekq ifneaqiyke kvlaarapls lnednvf
//
Feature
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Protein clusters for NP_178610.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT2G05420 gene (NM_126565.2).

More about the AT2G05420 gene

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