NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:GMI
Submitter Batch ID:2009AK_INDEL
Submitter Method ID:DIRECT DNA SEQUENCING
Citation:not supplied
Population:AK_Koreans
Comment:The SNPs were called by sequencing data with coverage 25.8x from Illumina Genome Analyzer IIx instrument. The filter condition used in calling of SNPs is same as that of paper "A highly annotated whole-genome sequence of a Korean individual" published in NATURE 2009.
Batch Total SubSNP(ss) Count:1169204


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss287939174 GMI_AK_INDEL_1 -/AACCCCTAACCCTAACCCTAAACCCTA 2 rs200462216 0 1 10229 NT_077402.3 229
ss287939180 GMI_AK_INDEL_2 -/ACCCCTAACCCTAACCCTAACCCT 2 rs201106462 0 1 10329 NT_077402.3 329
ss287939181 GMI_AK_INDEL_3 -/A 2 rs145072688 0 1 10353 NT_077402.3 353
ss287939183 GMI_AK_INDEL_4 -/G 2 rs200846102 0 1 49515 NT_077402.3 39515
ss287939185 GMI_AK_INDEL_5 -/TT 2 rs200525449 0 1 52234 NT_077402.3 42234
ss287939187 GMI_AK_INDEL_6 -/AA 2 rs199543075 0 1 53139 NT_077402.3 43139
ss287939189 GMI_AK_INDEL_7 -/TTTCTTTCTTTCTTTC 2 rs201095316 0 1 54713 NT_077402.3 44713
ss287939191 GMI_AK_INDEL_8 -/A 2 rs200672483 0 1 61351 NT_077402.3 51351
ss287939193 GMI_AK_INDEL_9 -/A 2 rs199634027 0 1 61361 NT_077402.3 51361
ss287939195 GMI_AK_INDEL_10 -/CTA 2 rs201888535 0 1 63736 NT_077402.3 53736
ss287939198 GMI_AK_INDEL_11 -/TATATA 2 rs201684885 0 1 66161 NT_077402.3 56161
ss287939200 GMI_AK_INDEL_12 -/ATAC 2 rs201217642 0 1 72141 NT_077402.3 62141
ss287939202 GMI_AK_INDEL_13 -/T 2 rs200379008 0 1 73843 NT_077402.3 63843
ss287939204 GMI_AK_INDEL_14 -/C 2 rs202072409 0 1 81591 NT_077402.3 71591
ss287939206 GMI_AK_INDEL_15 -/AAA 2 rs201023701 0 1 82134 NT_077402.3 72134
ss287939208 GMI_AK_INDEL_16 -/AGAAAGAAAGAAAGAAAGAA 2 rs200327217 0 1 83830 NT_077402.3 73830
ss287939210 GMI_AK_INDEL_17 -/G 2 rs199533981 0 1 98922 NT_077402.3 88922
ss287939212 GMI_AK_INDEL_18 -/CACACACA 2 rs201506079 0 1 104185 NT_077402.3 94185
ss287939214 GMI_AK_INDEL_19 -/GT 2 rs200833524 0 1 261300 NT_187170.1 3634
ss287939216 GMI_AK_INDEL_20 -/C 2 rs199948150 0 1 263935 NT_187170.1 6269
ss287939218 GMI_AK_INDEL_21 -/AAGT 2 rs140116466 0 1 274100 NT_187170.1 16434
ss287939220 GMI_AK_INDEL_22 -/G 2 rs200930606 0 1 275506 NT_187170.1 17840
ss287939222 GMI_AK_INDEL_23 -/T 2 rs200079338 0 1 279524 NT_187170.1 21858
ss287939224 GMI_AK_INDEL_24 -/C 2 rs72502741 0 1 281877 NT_187170.1 24211
ss287939228 GMI_AK_INDEL_26 -/TG 2 rs200542524 0 1 286158 NT_187170.1 28492
ss287939226 GMI_AK_INDEL_25 -/CT 2 rs201519762 0 1 286173 NT_187170.1 28507
ss287939230 GMI_AK_INDEL_27 -/TTG 2 rs199657448 0 1 475308 NT_077912.2 127340
ss287939232 GMI_AK_INDEL_28 -/ATTGT 2 rs201534199 0 1 604966 NT_032977.10 18978
ss287939234 GMI_AK_INDEL_29 -/GCTCA 2 rs200512757 0 1 610761 NT_032977.10 24773
ss287939236 GMI_AK_INDEL_30 -/GT 2 rs199997055 0 1 612253 NT_032977.10 26265
30 of 1169204 subsnp's starting at ss287939174. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement