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Submitted SNP(ss) Details: ss80834643           
Submitter
HandleHGSV
Submitter SNP IDCor12878_DIV_20070510.chr1_34085111-34085118_1
RefSNP(rs#)rs550425228
Submitted Batch IDNA12878-Fosmids-20070510-DIPs
Submitted DateNov 26, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12878-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed Allele-/AGAGAG
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize86346171 168-169 61 forward -6

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80834643|allelePos=501|len=706|taxid=9606|alleles='-/AGAGAG'|mol=Genomic
 CACATGGCCC AAATTACTCT CCTGCCCTTG CCCCAAACCC ATCTCTCCCC TGGGTTCCTT
 GCATCTGGGA CTGGCCCATC ATCCAGCCAG CCATCCAAGC TGAGACCTCA TCTGGTCTCA
 CACCCAGTCT CTTGAATTAC CTTCCTTCCA TCTCTCATAT CTGCCCCCAC CCCATTGCTC
 AGGCTCCAGG ACCAGGCCCT ACCCTATCTC AGTTTCTTCT CTTGGACTTG GAGATAGCCT
 CCTCATTGTT CTGTCTTCAG ACTTGCCCCA ATCCAACCCA TTCTCTAAAC AACTAGTAGG
 ATCATGGCTC TTCCCTCCTA AAAGCGCTTC AGTTGGTGTC AAGCTCTAGA ATATCACTCA
 AGGTCCTCCA TGAGCTAGCC CCACCCATGT CTCCAACTGT ACGTACCCGT CTCCTCCTCA
 CACCCAATGT TCCAGCAACA ATGGCTCTCC TTATTTCTCC TCCAGCAGAG AGAGAGAGAG
 AGAGAGAGAG AGAGAGAGAG
 N
 GAGAGTTTGT GTCTATAGTC ATGCTGGTGT GTTGGTGTTA CATGAGCATG TGTGTGTCTA
 TATATGCATG TAAACTGCAT AACTATGAAA TGTGTGGGTA TGTGGGTATG TGCAGGGACA
 TGGCATGTGG GTATTCAGGT AGGAGAGCCT GTTGAGGATG GGCATTGAGG GAAACGTGGT
 TGAGAAGCCA GTGGTTGGCA TAGTT

  Submitted Frequency for ss80834643 back to top
There is no frequency submission for ss80834643.


  dbSNP summary of Genotypes for ss80834643 back to top
No sufficient data to compute Hardy-weinberg probability for ss80834643.


  Submitted individual genotype for ss80834643 back to top
There is no individual genotype data for ss80834643.

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