Submitted SNP(ss) Details: ss28532778

Submitted SNP(ss) Details: ss28532778

Submitter
Handle	ABI
Submitter SNP ID	hCV1247837
RefSNP(rs#)	rs17882626
Submitted Batch ID	xplore_hum_chr17_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Nov 10 2004 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCCCGCAGGG GCCAAAGTCT GGATGCTGGG GTCTCCACTC AGAGCCTGGT AGTAAAAGCT
 GGTGCAGAAT AAGGTCGTTC CGGAAGCTAG CAATAACCCA GCCTGAAGGA GACACAGCAC
 AGAAAACAGG ATTGTTAAGA ACAGGGCAGG CTGAGAGGGA GTGTGTGGGG CTTGGTCAGG
 GTTAGGCGCA GGGAAAGATT ACCCAGAGTG GCTTTCTGCA ATGGGGCACC CCTAACAGGG
 CCAGGCTGTG TAAGAAGTGG TGTTTGTTGG CCTTGTCAAA CAGCTGTAAG AAAAACAGAA
 R
 CGAAGGGATG TCGTAGGCAA TACAGGTACT GAGATCCCCT GATGACACAA GGGACCAAAG
 TTCCTTCCCC CACCCCACCC TTGAAGTCCC AGCTTGATCC CAGGCCTTTG GCTTACAGAG
 CCTTTGGCCT TTGCTGCTCC AGAGATCCGC GGCTCGCCCC ACCCTCTCCC CGCCCACTTC
 CCCCAGGGAC CCCAGACTTT GTGCCTTCGT AGACCCACGA GTCAGGGAGC CCCAGCGCAG
 TTACTTCACC TCCTTCCCGT AGGCATCTGG GAATTGGGCG CCTGTGGAGA AAAGAAGCAA

Submitted Frequency for ss28532778

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AoD_African_American - NORTH AMERICA	90	A=0.86000001	G=0.14000000				xplore_hum_chr17_1	ABI
AoD_Caucasian - NORTH AMERICA	92	A=0.68000001	G=0.33000001				xplore_hum_chr17_1	ABI

dbSNP summary of Genotypes for ss28532778

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HAPMAP-CHB	82	82	A=0.76829267	G=0.23170732	A/A=0.60975611 A/G=0.31707317 G/G=0.07317073	Pr(chiSq=0.491,df=1) =0.527	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.83720928	G=0.16279070	A/A=0.72093022 A/G=0.23255815 G/G=0.04651163	Pr(chiSq=0.927,df=1) =0.343	Genotype Freq.
HAPMAP-ASW	98	98	A=0.93877554	G=0.06122449	A/A=0.89795917 A/G=0.08163265 G/G=0.02040816	Pr(chiSq=4.117,df=1) =0.050	Genotype Freq.
HAPMAP-MEX	100	100	A=0.81000000	G=0.19000000	A/A=0.66000003 A/G=0.30000001 G/G=0.04000000	Pr(chiSq=0.032,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	A=0.85294116	G=0.14705883	A/A=0.72941178 A/G=0.24705882 G/G=0.02352941	Pr(chiSq=0.020,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	A=0.87209302	G=0.12790698	A/A=0.75581396 A/G=0.23255815 G/G=0.01162791	Pr(chiSq=0.155,df=1) =0.752	Genotype Freq.
HAPMAP-GIH	176	176	A=0.86363637	G=0.13636364	A/A=0.75000000 A/G=0.22727273 G/G=0.02272727	Pr(chiSq=0.108,df=1) =0.752	Genotype Freq.
HAPMAP-TSI	176	176	A=0.65909094	G=0.34090909	A/G=0.54545456 A/A=0.38636363 G/G=0.06818182	Pr(chiSq=4.022,df=1) =0.050	Genotype Freq.
HAPMAP-LWK	180	180	A=0.94999999	G=0.05000000	A/A=0.91111112 A/G=0.07777778 G/G=0.01111111	Pr(chiSq=2.958,df=1) =0.100	Genotype Freq.
HapMap-CEU	226	226	A=0.73893803	G=0.26106194	A/A=0.51327431 A/G=0.45132744 G/G=0.03539823	Pr(chiSq=3.258,df=1) =0.100	Genotype Freq.
HapMap-YRI	226	226	A=0.94690263	G=0.05309734	A/A=0.89380533 A/G=0.10619469	Pr(chiSq=0.037,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	A=0.90559441	G=0.09440559	A/A=0.81818181 A/G=0.17482518 G/G=0.00699301	Pr(chiSq=0.072,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss28532778

There is no individual genotype data for ss28532778.

Disclaimer Privacy statement