NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss255419688           
Submitter
HandleBL
Submitter SNP IDSNP7_20_16749
RefSNP(rs#)rs6086616
Submitted Batch IDIrish1_chr20
Submitted DateAug 20, 2010
Publication CitedN.D.
First entry to dbSNPAug 20 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodIRISH_GENOME_SEQUENCING
Ascertainment Samplesize2
PopulationIrish
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss255419688|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 GCAGGAAAAA TCTGGGCCAA CAAAGAGCAG CAGAATGCTC TTATTTTGGC AGCTCCATGC
 CCCTAGTCTC TGAGAATCTT TCTGTTAGGG GCATCTAGCA AGCTGGGATG TCCTCTGAGG
 CATTTCTCCA AAGACAAGAA TTTCCTTAAT GCTCTGAGCC ACCCTATCTG TCTCTCTACA
 TAACTATCCA ATGTTAGTTC AGCCTCACTT CACTTCCATT TCGATTATTC TGTTGTATCT
 ATTTCATTGT
 Y
 GTGTCCTATT AGTTCTCCTA CCATCTTGAA TTCTTCTTTG CCCGGAGGGT ACCTTCAGAG
 GGAGGCCCTC ACTTTCATGT TCTTAGATAT GGTGAACAAG TCCATTGACA GTTTGTAGAT
 TCTGTAGCAC TATCATATGG AAGAGACAAT ATATATGTTT GGGGTAGAAG TGGAAATAAG
 TGGAGTGAAG ACAGGATAGA CAGACTAGTG ACCAATGGGG AGCTTCTAAT TTTAGATGAA
 TAGGAACAGT

  Submitted Frequency for ss255419688 back to top
There is no frequency submission for ss255419688.


  dbSNP summary of Genotypes for ss255419688 back to top
No sufficient data to compute Hardy-weinberg probability for ss255419688.


  Submitted individual genotype for ss255419688 back to top
There is no individual genotype data for ss255419688.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement