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Submitted SNP(ss) Details: ss162980590           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_554517
RefSNP(rs#)rs147404388
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980590|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 ATTTTCTTCA GTGGGACTTT TTTGTTTAAT ATATTAGATT TGACCTTCAG CAAGGTCAAA
 GGGAGTCCGA ACTAGTCTCA GGCTTCAACA TCGAATACGC CGCAGGCCCC TTCGCCCTAT
 TCTTCATAGC CGAATACACA AACATTATTA TAATAAACAC CCTCACCACT ACAATCTTCC
 TAGGAACAAC ATATAACGCA CTCTCCCCTG AACTCTACAC AACATATTTT GTCACCAAGA
 CCCTACTTCT
 R
 ACCTCCCTGT TCTTATGAAT TCGAACAGCA TACCCCCGAT TCCGCTACGA CCAACTCATA
 CACCTCCTAT GAAAAAACTT CCTACCACTC ACCCTAGCAT TACTTATATG ATATGTCTCC
 ATACCCATTA CAATCTCCAG CATTCCCCCT CAAACCTAAG AAATATGTCT GATAAAAGAG
 TTACTTTGAT AGAGTAAATA ATAGGAGTTT AAATCCCCTT ATTTCTAGGA CTATGAGAAT
 CGAACCCATC

  Submitted Frequency for ss162980590 back to top
There is no frequency submission for ss162980590.


  dbSNP summary of Genotypes for ss162980590 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980590.


  Submitted individual genotype for ss162980590 back to top
There is no individual genotype data for ss162980590.

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