NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss162980565           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_53655
RefSNP(rs#)rs2907079
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980565|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 GGTCACTGCC AACAGTGGAT TCATATCGAT GGGCACCTTC TTTTTCTTAA TTGTATCATA
 CATTTTTATT CTGGTCACTG TCCAACGACA TTCCTCAAAT GATTTATCCA AAGCATTCTT
 CACTTCGTCG GCTCACATCA CCGTAGTGGT TTTGTTTTTT GCTCCATGCA TGTTTCTCTA
 CGTGTGGCCT TTCCCTACTA AGTCATTGGA TAAATTTTTT GCCATCATGA ACTTTGTTGT
 CACCCCTGTC
 K
 TAAATCCTGC CATCTATACT TTAAGGAACA AAGATATGAA GTTTGCAATG AGAAGGCTGA
 ATCAACATAT TTTAAATTCT ATGGAGACGA CATAACACAT TTGGTTGATG AGAGCACAGG
 ATAAATGCCA TGGACCATCA AGACTCCTGT GATCACCATG ATCACTATGG AACGCGCACA
 TTTTTAGTAT TGCCTGAAAA AACTGAAAAA TCTGCAAAAA GGATGCATTA AATCTAAGAA
 TTGTATTTCA

  Submitted Frequency for ss162980565 back to top
There is no frequency submission for ss162980565.


  dbSNP summary of Genotypes for ss162980565 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980565.


  Submitted individual genotype for ss162980565 back to top
There is no individual genotype data for ss162980565.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement