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Mansc1 MANSC domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 67729, updated on 4-Jan-2025

Summary

Official Symbol
Mansc1provided by MGI
Official Full Name
MANSC domain containing 1provided by MGI
Primary source
MGI:MGI:1914979
See related
Ensembl:ENSMUSG00000032718 AllianceGenome:MGI:1914979
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9130403P13Rik
Summary
Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human MANSC1 (MANSC domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Broad expression in colon adult (RPKM 17.3), stomach adult (RPKM 8.5) and 18 other tissues See more
Orthologs
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Genomic context

See Mansc1 in Genome Data Viewer
Location:
6 G1; 6 65.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (134586170..134609451, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (134609207..134632488, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933406J09 gene Neighboring gene STARR-seq mESC enhancer starr_17545 Neighboring gene BCL2 like 14 Neighboring gene low density lipoprotein receptor-related protein 6 Neighboring gene STARR-seq mESC enhancer starr_17546 Neighboring gene STARR-positive B cell enhancer mm9_chr6:134565289-134565590 Neighboring gene STARR-positive B cell enhancer ABC_E9105 Neighboring gene BLOC-1 related complex subunit 5 Neighboring gene predicted gene, 57779 Neighboring gene STARR-seq mESC enhancer starr_17547 Neighboring gene dual specificity phosphatase 16 Neighboring gene predicted gene, 36328

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in Golgi apparatus  
is_active_in cellular_component  
located_in membrane  

General protein information

Preferred Names
MANSC domain-containing protein 1
NP_080621.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026345.4NP_080621.1  MANSC domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_080621.1

    Status: VALIDATED

    Source sequence(s)
    AK033557, BC039930
    Consensus CDS
    CCDS20637.1
    UniProtKB/Swiss-Prot
    Q80V71, Q9CR33
    UniProtKB/TrEMBL
    Q3TAH6
    Related
    ENSMUSP00000038346.4, ENSMUST00000047443.5
    Conserved Domains (2) summary
    smart00765
    Location:23116
    MANEC; The MANEC domain, formerly called MANSC
    PHA03255
    Location:234394
    PHA03255; BDLF3; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    134586170..134609451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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