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Spata31d1d spermatogenesis associated 31 subfamily D, member 1D [ Mus musculus (house mouse) ]

Gene ID: 238663, updated on 4-Jan-2025

Summary

Official Symbol
Spata31d1dprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily D, member 1Dprovided by MGI
Primary source
MGI:MGI:3045260
See related
Ensembl:ENSMUSG00000043986 AllianceGenome:MGI:3045260
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam75d1d; 4932411G14Rik
Summary
Orthologous to human SPATA31D1 (SPATA31 subfamily D member 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward testis adult (RPKM 36.1) See more
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Genomic context

See Spata31d1d in Genome Data Viewer
Location:
13 B2; 13 31.87 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (59873739..59879566, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (59725925..59731752, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40972 Neighboring gene spermatogenesis associated 31 subfamily D, member 1B Neighboring gene STARR-seq mESC enhancer starr_34723 Neighboring gene RIKEN cDNA 4930528D03 gene Neighboring gene spermatogenesis associated 31 subfamily D, member 1E

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component  

General protein information

Preferred Names
putative spermatogenesis-associated protein 31D3
Names
family with sequence similarity 75, member D1D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177711.3NP_808379.2  putative spermatogenesis-associated protein 31D3

    Status: VALIDATED

    Source sequence(s)
    AC134869, AK077018, BX631049
    Consensus CDS
    CCDS49286.1
    UniProtKB/TrEMBL
    E9Q5W2
    Related
    ENSMUSP00000128200.2, ENSMUST00000052978.6
    Conserved Domains (2) summary
    pfam14650
    Location:383731
    FAM75; FAM75 family
    pfam15371
    Location:72144
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    59873739..59879566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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