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Catsperz catsper channel auxiliary subunit zeta [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362120, updated on 4-Jan-2025

Summary

Official Symbol
Catsperzprovided by RGD
Official Full Name
catsper channel auxiliary subunit zetaprovided by RGD
Primary source
RGD:2318763
See related
EnsemblRapid:ENSRNOG00000089798 AllianceGenome:RGD:2318763
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tex40
Summary
Predicted to be involved in flagellated sperm motility; male meiotic nuclear division; and sperm capacitation. Predicted to be located in cytoplasm and sperm principal piece. Predicted to be part of CatSper complex. Orthologous to human CATSPERZ (catsper channel auxiliary subunit zeta). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 380.1) and Brain (RPKM 39.9) See more
Orthologs
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Genomic context

See Catsperz in Genome Data Viewer
Location:
1q43
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (213544032..213547326, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (204114816..204118582, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (222179451..222182716, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin 5 Neighboring gene tRNA methyltransferase activator subunit 11-2 Neighboring gene estrogen related receptor, alpha Neighboring gene uncharacterized LOC134483962 Neighboring gene potassium two pore domain channel subfamily K member 4 Neighboring gene G protein-coupled receptor 137

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in flagellated sperm motility  
involved_in male meiotic nuclear division  
involved_in sperm capacitation  
involved_in spermatogenesis  
Component Evidence Code Pubs
part_of CatSper complex  
located_in cytoplasm  
located_in sperm principal piece  

General protein information

Preferred Names
cation channel sperm-associated auxiliary subunit zeta; catsper channel auxiliary subunit zeta
Names
cation channel sperm-associated protein subunit zeta
rCG47836-like
testis expressed 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432734.1NP_001419663.1  catsper channel auxiliary subunit zeta isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
  2. NM_001432735.1NP_001419664.1  catsper channel auxiliary subunit zeta isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A0G2K360
  3. NM_001432736.1NP_001419665.1  catsper channel auxiliary subunit zeta isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6HZJ5
  4. NM_001432737.1NP_001419666.1  catsper channel auxiliary subunit zeta isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RNA

  1. NR_197303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
  2. NR_197304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
  3. NR_197305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    213544032..213547326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279957.1XP_063136027.1  cation channel sperm-associated auxiliary subunit zeta isoform X10

  2. XM_063279954.1XP_063136024.1  cation channel sperm-associated auxiliary subunit zeta isoform X9

  3. XM_063279947.1XP_063136017.1  cation channel sperm-associated auxiliary subunit zeta isoform X6

  4. XM_063279939.1XP_063136009.1  cation channel sperm-associated auxiliary subunit zeta isoform X4

    Related
    ENSRNOP00000105768.1, ENSRNOT00000154998.1
  5. XM_063279935.1XP_063136005.1  cation channel sperm-associated auxiliary subunit zeta isoform X2

  6. XM_063279952.1XP_063136022.1  cation channel sperm-associated auxiliary subunit zeta isoform X8

  7. XM_063279951.1XP_063136021.1  cation channel sperm-associated auxiliary subunit zeta isoform X7

  8. XM_063279944.1XP_063136014.1  cation channel sperm-associated auxiliary subunit zeta isoform X5

  9. XM_063279936.1XP_063136006.1  cation channel sperm-associated auxiliary subunit zeta isoform X3

  10. XM_063279933.1XP_063136003.1  cation channel sperm-associated auxiliary subunit zeta isoform X1

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