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1700013H16Rik RIKEN cDNA 1700013H16 gene [ Mus musculus (house mouse) ]

Gene ID: 75514, updated on 4-Jan-2025

Summary

Official Symbol
1700013H16Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700013H16 geneprovided by MGI
Primary source
MGI:MGI:1922764
See related
Ensembl:ENSMUSG00000054727 AllianceGenome:MGI:1922764
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Slx2; Xlr6
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Located in XY body; chromatin; and nucleolus. Is expressed in gonad. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward testis adult (RPKM 1.5) See more
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Genomic context

See 1700013H16Rik in Genome Data Viewer
Location:
X A5; X 30.01 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52744868..52759936, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53742901..53757970, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene expressed sequence AW822252 Neighboring gene cancer/testis antigen 55 Neighboring gene predicted pseudogene 6025 Neighboring gene zinc finger protein 36, C3H type-like 3 Neighboring gene 60S ribosomal protein L37 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

General gene information

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in meiotic cell cycle  
involved_in spermatid development  
Component Evidence Code Pubs
located_in XY body PubMed 
located_in chromatin PubMed 
located_in nucleolus PubMed 
located_in nucleus PubMed 
is_active_in synaptonemal complex  

General protein information

Preferred Names
synaptonemal complex protein 3-like
Names
SYCP3-like X-linked 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200013.1NP_001186942.1  synaptonemal complex protein 3-like

    See identical proteins and their annotated locations for NP_001186942.1

    Status: VALIDATED

    Source sequence(s)
    AK005953, AL691513
    Consensus CDS
    CCDS53071.1
    UniProtKB/TrEMBL
    Q9DAC5
    Related
    ENSMUSP00000063474.3, ENSMUST00000067940.3
    Conserved Domains (2) summary
    pfam04803
    Location:151270
    Cor1; Cor1/Xlr/Xmr conserved region
    pfam15724
    Location:469
    TMEM119; TMEM119 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52744868..52759936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535361.4XP_006535424.1  synaptonemal complex protein 3-like isoform X1

    Conserved Domains (1) summary
    pfam04803
    Location:11142
    Cor1; Cor1/Xlr/Xmr conserved region
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