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LINC02533 long intergenic non-protein coding RNA 2533 [ Homo sapiens (human) ]

Gene ID: 105374895, updated on 10-Dec-2024

Summary

Official Symbol
LINC02533provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2533provided by HGNC
Primary source
HGNC:HGNC:53566
See related
AllianceGenome:HGNC:53566
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02533 in Genome Data Viewer
Location:
6p25.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (4488798..4495771)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (4357719..4364687)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (4489032..4496005)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374894 Neighboring gene uncharacterized LOC107986561 Neighboring gene uncharacterized LOC124901247 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:4466860-4468059 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:4487436-4488635 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:4503825-4504510 Neighboring gene uncharacterized LOC497048 Neighboring gene uncharacterized LOC124901549

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162718

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    4488798..4495771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    4357719..4364687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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