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Smim30 small integral membrane protein 30 [ Mus musculus (house mouse) ]

Gene ID: 66520, updated on 4-Jan-2025

Summary

Official Symbol
Smim30provided by MGI
Official Full Name
small integral membrane protein 30provided by MGI
Primary source
MGI:MGI:1913770
See related
Ensembl:ENSMUSG00000052419 AllianceGenome:MGI:1913770
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610001J05Rik
Summary
Predicted to be involved in negative regulation of type I interferon-mediated signaling pathway. Predicted to be active in endoplasmic reticulum membrane and mitochondrial membrane. Is expressed in cerebral cortex ventricular layer. Orthologous to human SMIM30 (small integral membrane protein 30). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Ubiquitous expression in bladder adult (RPKM 22.1), limb E14.5 (RPKM 14.3) and 25 other tissues See more
Orthologs
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Genomic context

See Smim30 in Genome Data Viewer
Location:
6 A1; 6 5.8 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (13867734..13871517, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (13867735..13871518, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4812 Neighboring gene STARR-positive B cell enhancer mm9_chr6:13645143-13645444 Neighboring gene STARR-seq mESC enhancer starr_15198 Neighboring gene predicted gene, 53312 Neighboring gene STARR-seq mESC enhancer starr_15199 Neighboring gene STARR-seq mESC enhancer starr_15200 Neighboring gene STARR-seq mESC enhancer starr_15201 Neighboring gene STARR-seq mESC enhancer starr_15202 Neighboring gene STARR-seq mESC enhancer starr_15203 Neighboring gene STARR-seq mESC enhancer starr_15204 Neighboring gene RIKEN cDNA 1110019D14 gene Neighboring gene G protein-coupled receptor 85 Neighboring gene STARR-seq mESC enhancer starr_15205 Neighboring gene predicted gene, 38767

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • MGC99440

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component  
is_active_in endoplasmic reticulum membrane  
located_in endoplasmic reticulum membrane  
located_in endoplasmic reticulum membrane  
is_active_in mitochondrial membrane  
located_in mitochondrial membrane  
located_in mitochondrial membrane  

General protein information

Preferred Names
small integral membrane protein 30
Names
microprotein in antiviral immunity 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001352887.1NP_001339816.1  small integral membrane protein 30 precursor

    Status: VALIDATED

    Source sequence(s)
    AC113309, AK152937
    Consensus CDS
    CCDS90029.1
    UniProtKB/Swiss-Prot
    F2Z3Y9, Q8CF75
    Related
    ENSMUSP00000116702.2, ENSMUST00000139231.2
    Conserved Domains (1) summary
    pfam15873
    Location:154
    DUF4730; Domain of unknown function (DUF4730)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    13867734..13871517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

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