U.S. flag

An official website of the United States government

Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820815, updated on 18-Sep-2024

Summary

Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT3G15720
Locus tag
AT3G15720
See related
Araport:AT3G15720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (5325127..5327672, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene phospholipase D alpha 1 Neighboring gene RING/U-box superfamily protein

Pathways from PubChem

General gene information

NM_001084693.1
NM_001338185.1
NM_112442.2

Gene Ontology Provided by TAIR

General protein information

Preferred Names
Pectin lyase-like superfamily protein
NP_001078162.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G27530.1); Has 4574 Blast hits to 4550 proteins in 589 species: Archae - 6; Bacteria - 1461; Metazoa - 14; Fungi - 1454; Plants - 1502; Viruses - 2; Other Eukaryotes - 135 (source: NCBI BLink).
NP_566524.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G35670.1); Has 4585 Blast hits to 4565 proteins in 589 species: Archae - 6; Bacteria - 1460; Metazoa - 14; Fungi - 1454; Plants - 1510; Viruses - 2; Other Eukaryotes - 139 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5325127..5327672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338184.1NP_001327675.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEU2, A0A1I9LT19
  2. NM_112442.2NP_566524.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566524.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LW07
    UniProtKB/TrEMBL
    A0A178VEU2
    Conserved Domains (2) summary
    PLN03003
    Location:1456
    PLN03003; Probable polygalacturonase At3g15720
    pfam00295
    Location:51375
    Glyco_hydro_28; Glycosyl hydrolases family 28
  3. NM_001338185.1NP_001327674.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEU2, A0A1I9LT18
  4. NM_001084693.1NP_001078162.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078162.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VH22, A8MRN3
    Conserved Domains (2) summary
    PLN03003
    Location:1452
    PLN03003; Probable polygalacturonase At3g15720
    pfam00295
    Location:50371
    Glyco_hydro_28; Glycosyl hydrolases family 28
External link. Please review our privacy policy.