U.S. flag

An official website of the United States government

ptpdc1b protein tyrosine phosphatase domain containing 1b [ Danio rerio (zebrafish) ]

Gene ID: 570928, updated on 4-Jan-2025

Summary

Official Symbol
ptpdc1bprovided by ZNC
Official Full Name
protein tyrosine phosphatase domain containing 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090312-138
See related
Ensembl:ENSDARG00000058873 AllianceGenome:ZFIN:ZDB-GENE-090312-138
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch73-142c19.2
Summary
Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ptpdc1b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (4373260..4390316)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (4434333..4453200)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene v-myb avian myeloblastosis viral oncogene homolog-like 2a Neighboring gene androgen dependent TFPI regulating protein 1 Neighboring gene si:ch73-142c19.1 Neighboring gene protein Wnt-7a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hydrolase activity  
enables phosphoprotein phosphatase activity  
enables protein tyrosine phosphatase activity  
enables protein tyrosine phosphatase activity  
Process Evidence Code Pubs
involved_in cilium assembly  
acts_upstream_of_or_within cilium assembly  
acts_upstream_of_or_within dephosphorylation  
acts_upstream_of_or_within protein dephosphorylation  
Component Evidence Code Pubs
is_active_in cytoplasm  

General protein information

Preferred Names
protein tyrosine phosphatase domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    4373260..4390316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353746.3XP_017209235.1  protein tyrosine phosphatase domain-containing protein 1-like isoform X3

    UniProtKB/TrEMBL
    A0A8M6YXZ1
  2. XM_009296601.4XP_009294876.1  protein tyrosine phosphatase domain-containing protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3AY38
    Conserved Domains (1) summary
    smart00404
    Location:136210
    PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
  3. XM_694462.9XP_699554.4  protein tyrosine phosphatase domain-containing protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8N7TFS7, E7FBM8
    Related
    ENSDARP00000122255.1, ENSDART00000144061.3
    Conserved Domains (1) summary
    smart00404
    Location:136210
    PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
  4. XM_017353747.3XP_017209236.1  protein tyrosine phosphatase domain-containing protein 1-like isoform X4

    UniProtKB/TrEMBL
    A0A8M3AV24, A0A8M6Z4L9
External link. Please review our privacy policy.