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H2al3 H2A histone family member L3 [ Mus musculus (house mouse) ]

Gene ID: 385317, updated on 4-Jan-2025

Summary

Official Symbol
H2al3provided by MGI
Official Full Name
H2A histone family member L3provided by MGI
Primary source
MGI:MGI:1922521
See related
Ensembl:ENSMUSG00000048994 AllianceGenome:MGI:1922521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930557A04Rik
Summary
Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See H2al3 in Genome Data Viewer
Location:
X A1.1; X 4.62 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (9715942..9716491)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (9849703..9850252)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46713 Neighboring gene dynein light chain Tctex-type 3 Neighboring gene synaptotagmin-like 5 Neighboring gene STARR-seq mESC enhancer starr_46715 Neighboring gene H2A.P histone Neighboring gene STARR-seq mESC enhancer starr_46716 Neighboring gene predicted gene 5754 Neighboring gene STARR-seq mESC enhancer starr_46717 Neighboring gene sushi-repeat-containing protein

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in heterochromatin formation  
Component Evidence Code Pubs
part_of nucleosome  
is_active_in nucleus  

General protein information

Preferred Names
uncharacterized protein LOC385317

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029229.1NP_083505.1  uncharacterized protein LOC385317

    See identical proteins and their annotated locations for NP_083505.1

    Status: VALIDATED

    Source sequence(s)
    AK016155
    Consensus CDS
    CCDS52999.1
    UniProtKB/TrEMBL
    Q9D4U4
    Related
    ENSMUSP00000052025.2, ENSMUST00000057113.3
    Conserved Domains (1) summary
    cl23907
    Location:496
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    9715942..9716491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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