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Spem1 spermatid maturation 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691981, updated on 4-Jan-2025

Summary

Official Symbol
Spem1provided by RGD
Official Full Name
spermatid maturation 1provided by RGD
Primary source
RGD:1593311
See related
EnsemblRapid:ENSRNOG00000015419 AllianceGenome:RGD:1593311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in flagellated sperm motility and sperm individualization. Predicted to act upstream of or within spermatogenesis. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human SPEM1 (spermatid maturation 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Restricted expression toward (RPKM 447.3) See more
Orthologs
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Genomic context

See Spem1 in Genome Data Viewer
Location:
10q24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (55040178..55041479, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (54541454..54542755, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (56428447..56429748, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene SPEM family member 3 Neighboring gene SPEM family member 2 Neighboring gene neuroligin 2 Neighboring gene transmembrane protein 256

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in flagellated sperm motility  
acts_upstream_of_or_within flagellated sperm motility  
involved_in sperm individualization  
acts_upstream_of_or_within sperm individualization  
acts_upstream_of_or_within spermatogenesis  
Component Evidence Code Pubs
is_active_in cytoplasm  
located_in cytoplasm  
located_in membrane  

General protein information

Preferred Names
spermatid maturation protein 1
Names
sperm maturation 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109653.1NP_001103123.1  spermatid maturation protein 1

    See identical proteins and their annotated locations for NP_001103123.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A6HFU1, D3ZZ79
    Related
    ENSRNOP00000020676.2, ENSRNOT00000020675.7
    Conserved Domains (1) summary
    pfam15670
    Location:23142
    Spem1; Spermatid maturation protein 1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    55040178..55041479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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