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Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833988, updated on 18-Sep-2024

Summary

Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT5G39910
Locus tag
AT5G39910
See related
Araport:AT5G39910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MYH19.70; MYH19_70
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Genomic context

Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (15979412..15981671, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene Small GTP-binding protein Neighboring gene pre-mRNA cleavage complex II protein Neighboring gene CLP1-similar protein 5

General gene information

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in extracellular region  

General protein information

Preferred Names
Pectin lyase-like superfamily protein
NP_198807.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G15720.1); Has 3880 Blast hits to 3866 proteins in 466 species: Archae - 6; Bacteria - 1031; Metazoa - 13; Fungi - 1258; Plants - 1455; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15979412..15981671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123354.1NP_198807.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198807.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KFW5, Q9FLE3
    Conserved Domains (1) summary
    cl19188
    Location:27358
    PL-6; Polysaccharide Lyase Family 6
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