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OVA5 Lysyl-tRNA synthetase, class II [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820551, updated on 18-Sep-2024

Summary

Official Symbol
OVA5
Official Full Name
Lysyl-tRNA synthetase, class II
Primary source
TAIR:AT3G13490
Locus tag
AT3G13490
See related
Araport:AT3G13490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2; ATKRS-2; OVULE ABORTION 5
Summary
Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.
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Genomic context

See OVA5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (4395663..4399350, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene evolutionarily conserved C-terminal region 2 Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene nuclear polyadenylated RNA-binding protein Neighboring gene uncharacterized protein Neighboring gene carboxyl-terminal peptidase, putative (DUF239)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_112195.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lysine-tRNA ligase activity  
enables mRNA binding PubMed 
Component Evidence Code Pubs
located_in chloroplast PubMed 
located_in chloroplast PubMed 
located_in chloroplast  
located_in mitochondrion PubMed 

General protein information

Preferred Names
Lysyl-tRNA synthetase, class II
NP_187958.1
  • OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 27489 Blast hits to 22097 proteins in 2943 species: Archae - 404; Bacteria - 18954; Metazoa - 615; Fungi - 809; Plants - 266; Viruses - 0; Other Eukaryotes - 6441 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4395663..4399350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112195.3NP_187958.1  Lysyl-tRNA synthetase, class II [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187958.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LJE2
    UniProtKB/TrEMBL
    A0A178VM04, A0A5S9XC46, A0A654F6T5
    Conserved Domains (1) summary
    PLN02502
    Location:80602
    PLN02502; lysyl-tRNA synthetase
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