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commd3 COMM domain containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 494135, updated on 4-Jan-2025

Summary

Official Symbol
commd3provided by ZNC
Official Full Name
COMM domain containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-041219-3
See related
Ensembl:ENSDARG00000045402 AllianceGenome:ZFIN:ZDB-GENE-041219-3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103771
Summary
Predicted to act upstream of or within sodium ion transport. Orthologous to human COMMD3 (COMM domain containing 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See commd3 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (17256807..17259643)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (17112388..17115224)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene SKI/DACH domain containing 1 Neighboring gene MLLT10 histone lysine methyltransferase DOT1L cofactor Neighboring gene bmi1 polycomb ring finger oncogene 1a Neighboring gene sperm associated antigen 6

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cellular_component  

General protein information

Preferred Names
COMM domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008734.2NP_001008734.1  COMM domain-containing protein 3

    See identical proteins and their annotated locations for NP_001008734.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086852
    UniProtKB/TrEMBL
    Q5M9N2
    Related
    ENSDARP00000066763.3, ENSDART00000066764.5
    Conserved Domains (1) summary
    cd04751
    Location:97191
    Commd3; COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    17256807..17259643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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