U.S. flag

An official website of the United States government

MGP C2H2 and C2HC zinc fingers superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839396, updated on 18-Sep-2024

Summary

Official Symbol
MGP
Official Full Name
C2H2 and C2HC zinc fingers superfamily protein
Primary source
TAIR:AT1G03840
Locus tag
AT1G03840
See related
Araport:AT1G03840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21M11.25; F21M11_25; IDD3; INDETERMINATE DOMAIN 3; Magpie
Summary
MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See MGP in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (967470..970334, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene E6-like protein Neighboring gene guanylate-binding family protein Neighboring gene Glutaredoxin family protein Neighboring gene prohibitin 2

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_001035874.1
NM_100263.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
C2H2 and C2HC zinc fingers superfamily protein
NP_001030951.1
  • Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_171880.1
  • Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 50307 Blast hits to 19551 proteins in 373 species: Archae - 0; Bacteria - 2; Metazoa - 47709; Fungi - 273; Plants - 826; Viruses - 4; Other Eukaryotes - 1493 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    967470..970334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100263.4NP_171880.1  C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171880.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q700E8, Q9ZWA6
    UniProtKB/TrEMBL
    A0A178W8W7, A0A384LMU1, A0A7G2DR01, C0SUS5
    Conserved Domains (1) summary
    sd00017
    Location:7292
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001035874.1NP_001030951.1  C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030951.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DR01
    Conserved Domains (1) summary
    sd00017
    Location:7090
    ZF_C2H2; C2H2 Zn finger [structural motif]
External link. Please review our privacy policy.