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LCR69 low-molecular-weight cysteine-rich 69 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814741, updated on 18-Sep-2024

Summary

Official Symbol
LCR69
Official Full Name
low-molecular-weight cysteine-rich 69
Primary source
TAIR:AT2G02100
Locus tag
AT2G02100
See related
Araport:AT2G02100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5O4.13; F5O4_13; low-molecular-weight cysteine-rich 69; PDF2.2
Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
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Genomic context

See LCR69 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (528179..529186)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo

Interactions

General gene information

NM_126271.3

Gene Ontology Provided by TAIR

General protein information

Preferred Names
low-molecular-weight cysteine-rich 69
NP_178319.1
  • low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    528179..529186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126271.3NP_178319.1  low-molecular-weight cysteine-rich 69 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178319.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39182, Q42011, Q4VP00, Q4VP03
    UniProtKB/TrEMBL
    A0A178VVN9, A0A5S9WWH1
    Conserved Domains (1) summary
    pfam00304
    Location:3477
    Gamma-thionin; Gamma-thionin family
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