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DNA/RNA-binding protein Kin17, conserved region [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841993, updated on 18-Sep-2024

Summary

Official Full Name
DNA/RNA-binding protein Kin17, conserved region
Primary source
TAIR:AT1G55460
Locus tag
AT1G55460
See related
Araport:AT1G55460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtKIN17; KIN17; T5A14.13; T5A14_13
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Genomic context

Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (20707307..20709027)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene protein containing PDZ domain, a K-box domain, and a TPR region

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_104422.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nuclear speck PubMed 

General protein information

Preferred Names
DNA/RNA-binding protein Kin17, conserved region
NP_564690.1
  • DNA/RNA-binding protein Kin17, conserved region; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DNA/RNA-binding protein Kin17, conserved region (InterPro:IPR019447), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: DNA/RNA-binding protein Kin17, conserved region (TAIR:AT5G51795.1); Has 1885 Blast hits to 1561 proteins in 251 species: Archae - 4; Bacteria - 25; Metazoa - 715; Fungi - 242; Plants - 160; Viruses - 13; Other Eukaryotes - 726 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20707307..20709027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104422.2NP_564690.1  DNA/RNA-binding protein Kin17, conserved region [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564690.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZVU5
    UniProtKB/TrEMBL
    A0A178W9F0, A0A5S9WQ81, A0A654EJ78
    Conserved Domains (3) summary
    cd13155
    Location:357410
    KOW_KIN17; KOW_Kin17 is a RNA-binding motif
    pfam10357
    Location:55177
    Kin17_mid; Domain of Kin17 curved DNA-binding protein
    pfam18131
    Location:293346
    KN17_SH3; KN17 SH3-like C-terminal domain
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