U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    TAF12 TBP-associated factor 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820168, updated on 18-Sep-2024

    Summary

    Official Symbol
    TAF12
    Official Full Name
    TBP-associated factor 12
    Primary source
    TAIR:AT3G10070
    Locus tag
    AT3G10070
    See related
    Araport:AT3G10070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TAFII58; TATA-ASSOCIATED FACTOR II 58; TBP-associated factor 12
    Summary
    Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TAF12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (3103880..3106826, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene L-O-methylthreonine resistant 1 Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Interactions

    General gene information

    NM_111842.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding PubMed 
    enables protein heterodimerization activity  
    Component Evidence Code Pubs
    located_in nucleus  
    part_of transcription factor TFIID complex  

    General protein information

    Preferred Names
    TBP-associated factor 12
    NP_566367.1
    • TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3103880..3106826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111842.6NP_566367.1  TBP-associated factor 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566367.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SR71
      UniProtKB/TrEMBL
      A0A178VGU1, A0A5S9XAS5, A0A654F722
      Conserved Domains (2) summary
      TIGR01628
      Location:163286
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd07981
      Location:400468
      TAF12; TATA Binding Protein (TBP) Associated Factor 12
    External link. Please review our privacy policy.