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Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822302, updated on 18-Sep-2024

Summary

Official Full Name
Plant self-incompatibility protein S1 family
Primary source
TAIR:AT3G26860
Locus tag
AT3G26860
See related
Araport:AT3G26860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (9901294..9902119, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Esterase/lipase/thioesterase family protein Neighboring gene histone-lysine N-methyltransferase Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene miscRNA

General gene information

NM_001338836.1
NM_113598.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  
located_in extracellular region  

General protein information

Preferred Names
Plant self-incompatibility protein S1 family
NP_001319651.1
  • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G27331.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_189321.2
  • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G27331.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9901294..9902119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338836.1NP_001319651.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LW24
    UniProtKB/TrEMBL
    A0A5S9XFZ7
    Conserved Domains (1) summary
    pfam05938
    Location:23113
    Self-incomp_S1; Plant self-incompatibility protein S1
  2. NM_113598.2NP_189321.2  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189321.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1PEL2
    Conserved Domains (1) summary
    pfam05938
    Location:2386
    Self-incomp_S1; Plant self-incompatibility protein S1
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