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Polynucleotidyl transferase, ribonuclease H-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817048, updated on 18-Sep-2024

Summary

Official Full Name
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Primary source
TAIR:AT2G25100
Locus tag
AT2G25100
See related
Araport:AT2G25100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13D4.60; F13D4_60
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Genomic context

Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (10679524..10682054, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene stromal cell-derived factor 2-like protein precursor Neighboring gene ncRNA

General gene information

NM_001084487.1
NM_128067.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding  
enables RNA-DNA hybrid ribonuclease activity  
Component Evidence Code Pubs
located_in cytoplasm  
located_in nucleus  

General protein information

Preferred Names
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NP_001077956.1
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 6305 Blast hits to 6298 proteins in 2456 species: Archae - 256; Bacteria - 4469; Metazoa - 152; Fungi - 137; Plants - 56; Viruses - 3; Other Eukaryotes - 1232 (source: NCBI BLink).
NP_565584.1
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 5906 Blast hits to 5899 proteins in 2308 species: Archae - 263; Bacteria - 4202; Metazoa - 152; Fungi - 142; Plants - 56; Viruses - 3; Other Eukaryotes - 1088 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10679524..10682054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128067.5NP_565584.1  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565584.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYG9, Q8LA95, Q9SEZ6
    UniProtKB/TrEMBL
    A0A178VWK2, A0A5S9X0Y6, A0A7G2E8U4
    Conserved Domains (1) summary
    cd07181
    Location:17234
    RNase_HII_eukaryota_like; Eukaryotic RNase HII
  2. NM_001084487.1NP_001077956.1  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077956.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E8U4, A8MRI6
    Conserved Domains (1) summary
    cd07181
    Location:17215
    RNase_HII_eukaryota_like; Eukaryotic RNase HII
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