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    Ribosomal protein S5 domain 2-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824070, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ribosomal protein S5 domain 2-like superfamily protein
    Primary source
    TAIR:AT3G49080
    Locus tag
    AT3G49080
    See related
    Araport:AT3G49080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT3G49090
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (18194154..18196784, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP-binding protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene Signal recognition particle, SRP9/SRP14 subunit Neighboring gene peroxidase CA Neighboring gene uncharacterized protein

    Interactions

    General gene information

    NM_114767.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding PubMed 
    enables structural constituent of ribosome  
    Component Evidence Code Pubs
    located_in cytosol PubMed 
    located_in mitochondrion PubMed 
    located_in mitochondrion  

    General protein information

    Preferred Names
    Ribosomal protein S5 domain 2-like superfamily protein
    NP_190477.2
    • Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9, conserved site (InterPro:IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: ribosomal protein S9 (TAIR:AT1G74970.1); Has 8295 Blast hits to 8282 proteins in 2846 species: Archae - 200; Bacteria - 5387; Metazoa - 167; Fungi - 129; Plants - 162; Viruses - 18; Other Eukaryotes - 2232 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18194154..18196784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114767.4NP_190477.2  Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190477.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67Y07, Q8L6Z4, Q9SMU6
      UniProtKB/TrEMBL
      A0A178VJM9, A0A5S9XJA2
      Conserved Domains (1) summary
      PRK00132
      Location:307430
      rpsI; 30S ribosomal protein S9; Reviewed
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