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DAR4 DA1-related protein 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831657, updated on 18-Sep-2024

Summary

Official Symbol
DAR4
Official Full Name
DA1-related protein 4
Primary source
TAIR:AT5G17890
Locus tag
AT5G17890
See related
Araport:AT5G17890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CHILLING SENSITIVE 3; CHS3; DA1-related protein 4; MPI7.6; MPI7_6
Summary
Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.
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Genomic context

See DAR4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (5916862..5923494)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene ncRNA Neighboring gene microfibrillar-associated protein-like protein Neighboring gene cardiomyopathy-associated protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_121795.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP binding  
Component Evidence Code Pubs
located_in cytoplasm  

General protein information

Preferred Names
DA1-related protein 4
NP_197291.2
  • DA1-related protein 4 (DAR4); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: response to cold, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5916862..5923494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121795.4NP_197291.2  DA1-related protein 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197291.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKN7, Q9FKN8
    UniProtKB/TrEMBL
    A0A654G231
    Conserved Domains (7) summary
    cd00009
    Location:166294
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    cd09396
    Location:12401291
    LIM_DA1; The Lim domain of DA1
    PLN03210
    Location:26844
    PLN03210; Resistant to P. syringae 6; Provisional
    sd00033
    Location:618640
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01582
    Location:30163
    TIR; TIR domain
    pfam07725
    Location:594613
    LRR_3; Leucine Rich Repeat
    pfam12315
    Location:13871602
    DUF3633; Protein of unknown function (DUF3633)
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