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2900089D17Rik RIKEN cDNA 2900089D17 gene [ Mus musculus (house mouse) ]

Gene ID: 67277, updated on 22-Oct-2024

Summary

Official Symbol
2900089D17Rikprovided by MGI
Official Full Name
RIKEN cDNA 2900089D17 geneprovided by MGI
Primary source
MGI:MGI:1914527
See related
Ensembl:ENSMUSG00000087484 AllianceGenome:MGI:1914527
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 21.2), adrenal adult (RPKM 3.7) and 11 other tissues See more
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Genomic context

See 2900089D17Rik in Genome Data Viewer
Location:
5 G2; 5 83.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (144178591..144193054, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (144241781..144256155, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix family, member a15 Neighboring gene tectonin beta-propeller repeat containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E2183 Neighboring gene brain protein I3 Neighboring gene BAI1-associated protein 2-like 1 Neighboring gene predicted gene 15708 Neighboring gene STARR-seq mESC enhancer starr_14808 Neighboring gene Dmrt1 interacting ncRNA

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cellular_component  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190063.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139636
  2. NR_190064.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139636
  3. NR_190065.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139636
    Related
    ENSMUST00000304841.1
  4. NR_190066.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139636
    Related
    ENSMUST00000304840.1
  5. NR_190067.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139636
    Related
    ENSMUST00000304842.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    144178591..144193054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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