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Ubiquitin fusion degradation UFD1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830048, updated on 18-Sep-2024

Summary

Official Full Name
Ubiquitin fusion degradation UFD1 family protein
Primary source
TAIR:AT4G38930
Locus tag
AT4G38930
See related
Araport:AT4G38930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19H22.30; F19H22_30
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Genomic context

Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (18149533..18151793)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic pentacysteine 5 Neighboring gene vacuolar-type H[+]-ATPase C3 Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Interactions

General gene information

NM_001342513.1
NM_001342514.1
NM_120053.3
NM_202980.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
Ubiquitin fusion degradation UFD1 family protein
NP_568048.1
  • Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974709.1
  • Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18149533..18151793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120053.3NP_568048.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568048.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5A2, A0A384LQG7, Q8W570
    Conserved Domains (1) summary
    pfam03152
    Location:13183
    UFD1; Ubiquitin fusion degradation protein UFD1
  2. NM_202980.3NP_974709.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974709.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3D9, A0A384L5D3, Q9SVK0
    Conserved Domains (1) summary
    pfam03152
    Location:13183
    UFD1; Ubiquitin fusion degradation protein UFD1
  3. NM_001342513.1NP_001328898.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3D9, A0A384L5D3, Q9SVK0
    Conserved Domains (1) summary
    pfam03152
    Location:13183
    UFD1; Ubiquitin fusion degradation protein UFD1
  4. NM_001342514.1NP_001328897.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5A2, A0A384LQG7, Q8W570
    Conserved Domains (1) summary
    pfam03152
    Location:13183
    UFD1; Ubiquitin fusion degradation protein UFD1
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