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SKU5 Cupredoxin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826851, updated on 18-Sep-2024

Summary

Official Symbol
SKU5
Official Full Name
Cupredoxin superfamily protein
Primary source
TAIR:AT4G12420
Locus tag
AT4G12420
See related
Araport:AT4G12420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1P17.10; T1P17_10
Summary
Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.
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Genomic context

See SKU5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (7349187..7353135, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Asn Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene pseudo Neighboring gene pseudo

Interactions

General gene information

NM_001203775.2
NM_117312.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding  
enables oxidoreductase activity  

General protein information

Preferred Names
Cupredoxin superfamily protein
NP_001190704.1
  • SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1).
NP_192979.1
  • SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1); Has 6156 Blast hits to 6132 proteins in 1213 species: Archae - 8; Bacteria - 2095; Metazoa - 284; Fungi - 2301; Plants - 1268; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7349187..7353135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203775.2NP_001190704.1  Cupredoxin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190704.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WM56, Q8H7C9, Q9SU40
    UniProtKB/TrEMBL
    A0A178V188, A0A5S9XRW6, A0A654FNL1
    Conserved Domains (1) summary
    PLN00044
    Location:20557
    PLN00044; multi-copper oxidase-related protein; Provisional
  2. NM_117312.4NP_192979.1  Cupredoxin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192979.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WM56, Q8H7C9, Q9SU40
    UniProtKB/TrEMBL
    A0A178V188, A0A5S9XRW6, A0A654FNL1
    Conserved Domains (1) summary
    PLN00044
    Location:20557
    PLN00044; multi-copper oxidase-related protein; Provisional
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