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Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829085, updated on 18-Sep-2024

Summary

Official Full Name
Cytidine/deoxycytidylate deaminase family protein
Primary source
TAIR:AT4G29640
Locus tag
AT4G29640
See related
Araport:AT4G29640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.150; T16L4_150
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Genomic context

Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14525830..14526881)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Protein kinase superfamily protein

Pathways from PubChem

General gene information

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cytidine deaminase activity  
enables zinc ion binding  
Component Evidence Code Pubs
located_in chloroplast  

General protein information

Preferred Names
Cytidine/deoxycytidylate deaminase family protein
NP_194693.1
  • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 1027 Blast hits to 1027 proteins in 425 species: Archae - 0; Bacteria - 850; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14525830..14526881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119109.2NP_194693.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194693.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7L8, Q9ZT32
    Conserved Domains (3) summary
    cd01283
    Location:41131
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    TIGR01355
    Location:5293
    cyt_deam_dimer; cytidine deaminase, homodimeric
    pfam08211
    Location:137275
    dCMP_cyt_deam_2; Cytidine and deoxycytidylate deaminase zinc-binding region
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