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RBL Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821658, updated on 18-Sep-2024

Summary

Official Symbol
RBL
Official Full Name
Transducin/WD40 repeat-like superfamily protein
Primary source
TAIR:AT3G21060
Locus tag
AT3G21060
See related
Araport:AT3G21060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RbBP5 LIKE
Summary
Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex that is also involved in the timing of the floral transition.
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Genomic context

See RBL in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (7377391..7380213)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene photosystem II subunit T Neighboring gene NAD kinase 1 Neighboring gene ABC transporter-like protein Neighboring gene ABC-2 type transporter family protein

General gene information

NM_113000.6

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
part_of Set1C/COMPASS complex  
part_of Set1C/COMPASS complex PubMed 
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_188743.3
  • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7377391..7380213
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113000.6NP_188743.3  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188743.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHL4, Q5E915, Q84W60, Q9LJC6
    UniProtKB/TrEMBL
    A0A178VBW6, A0A7G2EK45
    Conserved Domains (2) summary
    sd00039
    Location:2666
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:24364
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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