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PUM2 pumilio 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817468, updated on 18-Sep-2024

Summary

Official Symbol
PUM2
Official Full Name
pumilio 2
Primary source
TAIR:AT2G29190
Locus tag
AT2G29190
See related
Araport:AT2G29190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APUM2; F16P2.43; F16P2_43; pumilio 2
Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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Genomic context

See PUM2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (12543812..12548563, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pumilio 1 Neighboring gene splicing factor PWI domain-containing protein

Interactions

General gene information

NM_001202701.1
NM_128475.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm  

General protein information

Preferred Names
pumilio 2
NP_001189630.1
  • pumilio 2 (PUM2); CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1).
NP_180482.1
  • pumilio 2 (PUM2); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3838 Blast hits to 2002 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 765; Fungi - 1352; Plants - 848; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12543812..12548563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128475.4NP_180482.1  pumilio 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180482.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVV2, Q8LPN4, Q9ZW06
    UniProtKB/TrEMBL
    A0A178VXS6, A0A5S9X2E0
    Conserved Domains (2) summary
    cd07920
    Location:635950
    Pumilio; Pumilio-family RNA binding domain
    pfam07990
    Location:277632
    NABP; Nucleic acid binding protein NABP
  2. NM_001202701.1NP_001189630.1  pumilio 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189630.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVV2, Q8LPN4, Q9ZW06
    UniProtKB/TrEMBL
    A0A178VXS6, A0A5S9X2E0
    Conserved Domains (2) summary
    cd07920
    Location:635950
    Pumilio; Pumilio-family RNA binding domain
    pfam07990
    Location:277632
    NABP; Nucleic acid binding protein NABP
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