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ARP apurinic endonuclease-redox protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818744, updated on 18-Sep-2024

Summary

Official Symbol
ARP
Official Full Name
apurinic endonuclease-redox protein
Primary source
TAIR:AT2G41460
Locus tag
AT2G41460
See related
Araport:AT2G41460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
apurinic endonuclease-redox protein; T26J13.5; T26J13_5
Summary
apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
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Genomic context

See ARP in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (17285470..17289023)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase Neighboring gene glycosyltransferase-like protein Neighboring gene ncRNA Neighboring gene agamous-like MADS-box protein Neighboring gene F-box family protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

NM_001125028.1
NM_001336913.1
NM_001336914.1
NM_129709.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast nucleoid PubMed 
located_in nucleus  

General protein information

Preferred Names
apurinic endonuclease-redox protein
NP_001118500.1
  • apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1, binding site (InterPro:IPR020847), Exodeoxyribonuclease III xth (InterPro:IPR004808), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_181677.1
  • apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17285470..17289023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129709.5NP_181677.1  apurinic endonuclease-redox protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181677.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P45951
    UniProtKB/TrEMBL
    A0A178VMT4, B2CJ89
    Conserved Domains (2) summary
    smart00513
    Location:97131
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    cd09087
    Location:277534
    Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases
  2. NM_001336913.1NP_001323447.1  apurinic endonuclease-redox protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX84, B2CJ89
    Conserved Domains (2) summary
    smart00513
    Location:90124
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    cd09087
    Location:270527
    Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases
  3. NM_001125028.1NP_001118500.1  apurinic endonuclease-redox protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118500.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H7C2
    Conserved Domains (3) summary
    smart00513
    Location:97131
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam06459
    Location:80234
    RR_TM4-6; Ryanodine Receptor TM 4-6
    cl00490
    Location:277400
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
  4. NM_001336914.1NP_001323448.1  apurinic endonuclease-redox protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX21, B2CJ89
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