U.S. flag

An official website of the United States government

castor1 cytosolic arginine sensor for mTORC1 subunit 1 [ Danio rerio (zebrafish) ]

Gene ID: 449937, updated on 27-Dec-2024

Summary

Official Symbol
castor1provided by ZNC
Official Full Name
cytosolic arginine sensor for mTORC1 subunit 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050327-38
See related
Ensembl:ENSDARG00000079588 AllianceGenome:ZFIN:ZDB-GENE-050327-38
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gatsl3; im:7140101; zgc:110774
Summary
Predicted to enable arginine binding activity. Predicted to be involved in cellular response to L-arginine and negative regulation of TORC1 signaling. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human CASTOR1 (cytosolic arginine sensor for mTORC1 subunit 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See castor1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (11982547..12031124, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (11485203..11530794, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ring finger protein, transmembrane 2 Neighboring gene SREBF pathway regulator in golgi 1 Neighboring gene oncostatin M Neighboring gene nipsnap homolog 1 (C. elegans) Neighboring gene leucine rich repeat containing 74B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables arginine binding  
Process Evidence Code Pubs
involved_in cellular response to L-arginine  
involved_in negative regulation of TORC1 signaling  
Component Evidence Code Pubs
located_in cytoplasm  
is_active_in cytosol  
located_in cytosol  

General protein information

Preferred Names
cytosolic arginine sensor for mTORC1 subunit 1
Names
GATS protein-like 3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020815.2NP_001018651.2  cytosolic arginine sensor for mTORC1 subunit 1

    Status: VALIDATED

    Source sequence(s)
    CR933780, CU571177, CU571331
    UniProtKB/TrEMBL
    Q58ER9
    Related
    ENSDART00000110991.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    11982547..12031124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Loading
External link. Please review our privacy policy.