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    Ss18l2 SS18, nBAF chromatin remodeling complex subunit like 2 [ Mus musculus (house mouse) ]

    Gene ID: 26901, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ss18l2provided by MGI
    Official Full Name
    SS18, nBAF chromatin remodeling complex subunit like 2provided by MGI
    Primary source
    MGI:MGI:1349474
    See related
    Ensembl:ENSMUSG00000032526 AllianceGenome:MGI:1349474
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Deb1; 1110020I04Rik
    Summary
    Is expressed in bone; cartilage; rib; sensory organ; and submandibular gland primordium. Orthologous to human SS18L2 (SS18 like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in heart adult (RPKM 32.5), cerebellum adult (RPKM 25.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ss18l2 in Genome Data Viewer
    Location:
    9 F4; 9 72.56 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (121539455..121541987)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (121710389..121712921)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene vasoactive intestinal peptide receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E10592 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:121591571-121591680 Neighboring gene SEC22 homolog C, vesicle trafficking protein Neighboring gene STARR-positive B cell enhancer mm9_chr9:121606658-121606959 Neighboring gene STARR-positive B cell enhancer ABC_E11426 Neighboring gene STARR-positive B cell enhancer ABC_E1400 Neighboring gene STARR-positive B cell enhancer ABC_E10593 Neighboring gene natural killer tumor recognition sequence Neighboring gene RIKEN cDNA E530011L22 gene Neighboring gene STARR-positive B cell enhancer ABC_E6812 Neighboring gene zinc finger and BTB domain containing 47

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    SS18-like protein 2
    Names
    Band 47B
    differentially expressed in B16F10 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026794.2NP_081070.1  SS18-like protein 2

      See identical proteins and their annotated locations for NP_081070.1

      Status: PROVISIONAL

      Source sequence(s)
      BC027548
      Consensus CDS
      CCDS40811.1
      UniProtKB/Swiss-Prot
      Q9D174
      UniProtKB/TrEMBL
      A0A1L1SQ78
      Related
      ENSMUSP00000035113.9, ENSMUST00000035113.11
      Conserved Domains (1) summary
      pfam05030
      Location:1471
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      121539455..121541987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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