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    Msgn1 mesogenin 1 [ Mus musculus (house mouse) ]

    Gene ID: 56184, updated on 9-Dec-2024

    Summary

    Official Symbol
    Msgn1provided by MGI
    Official Full Name
    mesogenin 1provided by MGI
    Primary source
    MGI:MGI:1860483
    See related
    Ensembl:ENSMUSG00000047002 AllianceGenome:MGI:1860483
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Msgn; pMsgn1
    Summary
    Enables DNA-binding transcription activator activity, RNA polymerase II-specific and chromatin binding activity. Acts upstream of or within segment specification and somitogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including allantois; embryo mesoderm; primitive streak; tail; and unsegmented mesenchyme. Orthologous to human MSGN1 (mesogenin 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See Msgn1 in Genome Data Viewer
    Location:
    12 A1.1; 12 5.58 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (11258383..11258949, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (11208382..11208948, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31536 Neighboring gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 Neighboring gene RIKEN cDNA 9530020I12 gene Neighboring gene STARR-seq mESC enhancer starr_31537 Neighboring gene STARR-seq mESC enhancer starr_31538 Neighboring gene STARR-positive B cell enhancer ABC_E7120 Neighboring gene GEN1, Holliday junction 5' flap endonuclease Neighboring gene STARR-positive B cell enhancer ABC_E8479 Neighboring gene structural maintenance of chromosomes 6 Neighboring gene microRNA 7675

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Clone Names

    • MGC151373

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nucleoplasm  
    is_active_in nucleus  

    General protein information

    Preferred Names
    mesogenin-1
    Names
    pMesogenin1
    paraxial mesoderm-specific expression and regulatory capacities
    paraxial mesoderm-specific mesogenin1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019544.1NP_062417.1  mesogenin-1

      See identical proteins and their annotated locations for NP_062417.1

      Status: PROVISIONAL

      Source sequence(s)
      AF261105
      Consensus CDS
      CCDS25814.1
      UniProtKB/Swiss-Prot
      Q9JK54
      Related
      ENSMUSP00000055001.2, ENSMUST00000049877.3
      Conserved Domains (1) summary
      pfam00010
      Location:119173
      HLH; Helix-loop-helix DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      11258383..11258949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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