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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844178, updated on 18-Sep-2024

Summary

Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G78420
Locus tag
AT1G78420
See related
Araport:AT1G78420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DA (large in Chinese) 2; DA2; F3F9.7; F3F9_7
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Genomic context

Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (29504532..29507680)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene VQ motif-containing protein Neighboring gene ROP interactive partner 2 Neighboring gene gibberellin 2-beta-dioxygenase

Interactions

General gene information

NM_001198496.1
NM_106489.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm  

General protein information

Preferred Names
RING/U-box superfamily protein
NP_001185425.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G17145.1).
NP_565180.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G17145.1); Has 267 Blast hits to 267 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 154; Plants - 74; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29504532..29507680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198496.1NP_001185425.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185425.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93YV5, Q9M9F8
    UniProtKB/TrEMBL
    A0A178WG89, A0A5S9WVG0
    Conserved Domains (2) summary
    cd00162
    Location:59101
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:58102
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  2. NM_106489.3NP_565180.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565180.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93YV5, Q9M9F8
    UniProtKB/TrEMBL
    A0A178WG89, A0A5S9WVG0
    Conserved Domains (2) summary
    cd00162
    Location:59101
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:58102
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
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