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    LCR80 low-molecular-weight cysteine-rich 80 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833815, updated on 18-Sep-2024

    Summary

    Official Symbol
    LCR80
    Official Full Name
    low-molecular-weight cysteine-rich 80
    Primary source
    TAIR:AT5G38330
    Locus tag
    AT5G38330
    See related
    Araport:AT5G38330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    low-molecular-weight cysteine-rich 80; MSI17.50; MSI17_50
    Summary
    Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
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    Genomic context

    See LCR80 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (15317683..15318511)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Toll-Interleukin-Resistance (TIR) domain family protein

    General gene information

    NM_123194.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region  

    General protein information

    Preferred Names
    low-molecular-weight cysteine-rich 80
    NP_198649.2
    • low-molecular-weight cysteine-rich 80 (LCR80); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 58 (TAIR:AT5G38317.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15317683..15318511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123194.3NP_198649.2  low-molecular-weight cysteine-rich 80 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198649.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MJT6, P82789, Q1PDQ7
      UniProtKB/TrEMBL
      A0A178UED4
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