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Ta11-like non-LTR retrotransposon [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825808, updated on 18-Sep-2024

Summary

Official Full Name
Ta11-like non-LTR retrotransposon
Primary source
TAIR:AT4G04730
Locus tag
AT4G04730
See related
Araport:AT4G04730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4B21.14; T4B21_14
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Genomic context

Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (2401927..2402349, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calcium-dependent kinase-like protein Neighboring gene calcium-dependent protein kinase 21 Neighboring gene calcium-dependent protein kinase 23 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Genomic Sequence:
NC_003075.7

General gene information

NM_116711.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
Ta11-like non-LTR retrotransposon
NP_192382.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13500.1); Has 49 Blast hits to 49 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2401927..2402349 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116711.1NP_192382.1  Ta11-like non-LTR retrotransposon [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192382.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0MF56, Q9M102
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