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Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837812, updated on 18-Sep-2024

Summary

Official Full Name
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Primary source
TAIR:AT1G02470
Locus tag
AT1G02470
See related
Araport:AT1G02470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6A9.26
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Genomic context

Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (511765..513721, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NIM1-interacting 1 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene tRNA-Phe Neighboring gene uncharacterized protein

General gene information

NM_001331340.1
NM_100128.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  

General protein information

Preferred Names
Polyketide cyclase/dehydrase and lipid transport superfamily protein
NP_001318905.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 390 Blast hits to 390 proteins in 132 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
NP_563655.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 391 Blast hits to 391 proteins in 131 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    511765..513721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100128.5NP_563655.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563655.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIY8, A0A5S9S8A9, F4HXI8
    Conserved Domains (1) summary
    cd07817
    Location:79219
    SRPBCC_8; Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
  2. NM_001331340.1NP_001318905.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9S8A9, A8MSF0
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