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FMR1NB FMR1 neighbor [ Homo sapiens (human) ]

Gene ID: 158521, updated on 10-Dec-2024

Summary

Official Symbol
FMR1NBprovided by HGNC
Official Full Name
FMR1 neighborprovided by HGNC
Primary source
HGNC:HGNC:26372
See related
Ensembl:ENSG00000176988 AllianceGenome:HGNC:26372
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT37; NYSAR35; NY-SAR-35
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward testis (RPKM 27.9) See more
Orthologs
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Genomic context

See FMR1NB in Genome Data Viewer
Location:
Xq27.3-q28
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (147981337..148026665)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (146246086..146292191)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (147062857..147108185)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene origin of replication in 5' region of FMR1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21039 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30007 Neighboring gene FMR1 antisense RNA 1 Neighboring gene fragile site, folic acid type, rare, fra(X)(q27.3) A Neighboring gene fragile X messenger ribonucleoprotein 1 Neighboring gene RNA, 5S ribosomal pseudogene 524 Neighboring gene ferritin heavy chain 1 pseudogene 8 Neighboring gene HAX1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

Related articles in PubMed

Phenotypes

EBI GWAS Catalog

Description
Genetically distinct subsets within ANCA-associated vasculitis.
EBI GWAS Catalog

Interactions

General gene information

Clone Names

  • FLJ25736

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane  

General protein information

Preferred Names
FMR1 neighbor protein
Names
cancer/testis antigen 37
sarcoma antigen NY-SAR-35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016349.2 RefSeqGene

    Range
    5009..50337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_152578.3NP_689791.1  FMR1 neighbor protein

    See identical proteins and their annotated locations for NP_689791.1

    Status: VALIDATED

    Source sequence(s)
    AK098602, BC034320
    Consensus CDS
    CCDS14683.1
    UniProtKB/Swiss-Prot
    D3DWT3, Q8N0W7
    Related
    ENSP00000359498.3, ENST00000370467.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    147981337..148026665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    146246086..146292191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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