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IRX14 Nucleotide-diphospho-sugar transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829842, updated on 18-Sep-2024

Summary

Official Symbol
IRX14
Official Full Name
Nucleotide-diphospho-sugar transferases superfamily protein
Primary source
TAIR:AT4G36890
Locus tag
AT4G36890
See related
Araport:AT4G36890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AP22.51; AP22_51; irregular xylem 14
Summary
The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.
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Genomic context

See IRX14 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (17379173..17382028, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain 2 Neighboring gene cysteine proteinase1 Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Genomic Sequence:
NC_003075.7

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

NM_119853.4

Gene Ontology Provided by TAIR

General protein information

Preferred Names
Nucleotide-diphospho-sugar transferases superfamily protein
NP_195407.2
  • irregular xylem 14 (IRX14); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT5G67230.1); Has 636 Blast hits to 635 proteins in 91 species: Archae - 0; Bacteria - 2; Metazoa - 399; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17379173..17382028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119853.4NP_195407.2  Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195407.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23194, Q8L707
    UniProtKB/TrEMBL
    A0A178UUK1, A0A384KJH8, A0A654FW89, W8Q2W9
    Conserved Domains (1) summary
    cl11394
    Location:160428
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
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