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LINC01278 long intergenic non-protein coding RNA 1278 [ Homo sapiens (human) ]

Gene ID: 92249, updated on 10-Dec-2024

Summary

Official Symbol
LINC01278provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1278provided by HGNC
Primary source
HGNC:HGNC:28090
See related
Ensembl:ENSG00000235437 AllianceGenome:HGNC:28090
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 13.5), prostate (RPKM 12.0) and 25 other tissues See more
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Genomic context

See LINC01278 in Genome Data Viewer
Location:
Xq11.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (63426558..63561095, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (61851829..61986360, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (62646438..62780975, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SPIN4 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:62550986-62551486 Neighboring gene chromobox 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20874 Neighboring gene spindlin family member 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:62627697-62628511 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:62712259-62712759 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62723770-62724270 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62724271-62724771 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:62780155-62780696 Neighboring gene Cdc42 guanine nucleotide exchange factor 9 Neighboring gene ARHGEF9 intronic transcript 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20875 Neighboring gene uncharacterized LOC128031833

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015353.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK001756, AL080202, BC048208, DA775971
    Related
    ENST00000609401.6
  2. NR_152609.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158203, AL391277
    Related
    ENST00000671033.1
  3. NR_152610.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158203, AL391277
    Related
    ENST00000662156.1
  4. NR_152611.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158203, AL391277
    Related
    ENST00000669422.2
  5. NR_152612.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080202, BC048208, DA775971
    Related
    ENST00000609143.7
  6. NR_152613.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158203, AL391277
    Related
    ENST00000761750.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    63426558..63561095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    61851829..61986360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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