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    rab5if RAB5 interacting factor [ Danio rerio (zebrafish) ]

    Gene ID: 334006, updated on 9-Dec-2024

    Summary

    Official Symbol
    rab5ifprovided by ZNC
    Official Full Name
    RAB5 interacting factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5938
    See related
    Ensembl:ENSDARG00000074790 AllianceGenome:ZFIN:ZDB-GENE-030131-5938
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi26d09; c20orf24; zgc:55393; wu:fi26d09; c23h20orf24
    Summary
    Predicted to act upstream of or within mitochondrial respirasome assembly. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 2. Orthologous to human RAB5IF (RAB5 interacting factor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rab5if in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (2906129..2913201)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (2962520..2969592)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene phospholipase C, gamma 1 Neighboring gene zinc fingers and homeoboxes 3b Neighboring gene DEAH-box helicase 35 Neighboring gene uncharacterized LOC137489067

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in endoplasmic reticulum  
    located_in endoplasmic reticulum membrane  
    located_in membrane  

    General protein information

    Preferred Names
    GEL complex subunit OPTI
    Names
    c23h20orf24 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199850.2NP_956144.2  GEL complex subunit OPTI

      Status: VALIDATED

      Source sequence(s)
      AW777652, CT613988, EH540625
      UniProtKB/TrEMBL
      A0A8M1PC00, F1RD59
      Related
      ENSDARP00000100542.2, ENSDART00000109304.4
      Conserved Domains (1) summary
      pfam07019
      Location:42118
      Rab5ip; Rab5-interacting protein (Rab5ip)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      2906129..2913201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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